Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1006
         (575 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032646-10|CAA21681.1|  725|Caenorhabditis elegans Hypothetical...    48   5e-06
Z81529-4|CAB04295.1|  272|Caenorhabditis elegans Hypothetical pr...    37   0.009
AF016445-8|AAC69052.1|  244|Caenorhabditis elegans Hypothetical ...    32   0.25 
Z81116-13|CAB03300.1|  245|Caenorhabditis elegans Hypothetical p...    31   0.59 
AF016445-5|AAC69059.1|  250|Caenorhabditis elegans Hypothetical ...    29   1.8  
AC006777-5|AAK72311.1|  247|Caenorhabditis elegans Hypothetical ...    29   1.8  
AF016445-11|AAC69054.1|  248|Caenorhabditis elegans Pharyngeal g...    28   4.1  
AF016445-4|AAC69058.1|  312|Caenorhabditis elegans Hypothetical ...    28   5.5  
Z68118-6|CAA92187.1|  311|Caenorhabditis elegans Hypothetical pr...    27   7.2  
U97008-7|AAB52313.1|  385|Caenorhabditis elegans Temporarily ass...    27   7.2  
AC024844-6|AAK29956.1|  442|Caenorhabditis elegans Hypothetical ...    27   7.2  
Z81529-7|CAB04292.1|  248|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AF016445-9|AAC69061.1|  156|Caenorhabditis elegans Hypothetical ...    27   9.5  

>AL032646-10|CAA21681.1|  725|Caenorhabditis elegans Hypothetical
           protein Y54E2A.11a protein.
          Length = 725

 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 27/84 (32%), Positives = 40/84 (47%)
 Frame = +2

Query: 2   AQFHWRPRPPTLLSXXXXXXXXXXXXXYYSQFESKDRMRSSKASKELVAKRTEQMKKFTE 181
           AQF WRPRPP  LS               ++F  +D     +AS+E+V KR + M  F  
Sbjct: 607 AQFKWRPRPPVKLSEQKQREIKKNLKKTAAKFIKQDDDEKCRASQEVVEKRRKIMAAFDI 666

Query: 182 YRESKIQEWNEQKPRRLELRDYVD 253
            R    ++ +  +  R+ LR+ VD
Sbjct: 667 IRSRNREQLDATRDERISLRNGVD 690


>Z81529-4|CAB04295.1|  272|Caenorhabditis elegans Hypothetical
           protein F35E8.6 protein.
          Length = 272

 Score = 37.1 bits (82), Expect = 0.009
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -1

Query: 365 PQTCVAYSDYSMTVCSSFTKNSITSSTVFTASVSRPSC 252
           P TC +Y   S T C+ + +N   +ST++T +  + SC
Sbjct: 228 PATCTSYMPDSTTKCAEYARNGFCTSTMYTQAAKKASC 265


>AF016445-8|AAC69052.1|  244|Caenorhabditis elegans Hypothetical
           protein T05B4.12 protein.
          Length = 244

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -1

Query: 359 TCVAYSDYSMTVCSSFTKNSITSSTVFTASVSRPSC 252
           TC +Y+  S T C+S+ KN   ++T +T +  +  C
Sbjct: 202 TCTSYAADSSTSCTSWAKNGFCTNTFYTVAQRKARC 237


>Z81116-13|CAB03300.1|  245|Caenorhabditis elegans Hypothetical
           protein T06C12.14 protein.
          Length = 245

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -1

Query: 383 AAS*LRPQTCVAYSDYSMTVCSSFTKNSITSSTVFTASVSRPSC 252
           +A+  R  TC ++   S T C +++ N   ++T +TA+  R  C
Sbjct: 195 SATTTRSSTCTSFISDSSTACRAWSLNGFCTNTFYTAAQRRSYC 238


>AF016445-5|AAC69059.1|  250|Caenorhabditis elegans Hypothetical
           protein T05B4.9 protein.
          Length = 250

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -1

Query: 359 TCVAYSDYSMTVCSSFTKNSITSSTVFTASVSRPSC 252
           TC +Y   S + C+S+++N   ++T +T +  R  C
Sbjct: 208 TCTSYIADSSSNCASWSRNGFCTNTFYTVAQRRSRC 243


>AC006777-5|AAK72311.1|  247|Caenorhabditis elegans Hypothetical
           protein Y46H3D.8 protein.
          Length = 247

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = -1

Query: 359 TCVAYSDYSMTVCSSFTKNSITSSTVFTASVSRPSC 252
           +C +Y+  S + C+S+  N   ++T +TA+  +  C
Sbjct: 205 SCTSYTADSSSACASWAANGFCTNTFYTAATRKSYC 240


>AF016445-11|AAC69054.1|  248|Caenorhabditis elegans Pharyngeal
           gland toxin-relatedprotein 4 protein.
          Length = 248

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/53 (22%), Positives = 25/53 (47%)
 Frame = -1

Query: 410 RCCPVLGEVAAS*LRPQTCVAYSDYSMTVCSSFTKNSITSSTVFTASVSRPSC 252
           RC    G    +     +C +++  S + CS++  N   ++T +TA+  +  C
Sbjct: 189 RCPSTTGSGTVTTASSGSCTSFAADSSSSCSAWAANGFCTNTFYTAAQRKSRC 241


>AF016445-4|AAC69058.1|  312|Caenorhabditis elegans Hypothetical
           protein T05B4.8 protein.
          Length = 312

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = -1

Query: 404 CPVLGEVAAS*LRPQTCVAYSDYSMTVCSSFTKNSITSSTVFTASVSRPSC 252
           CP      +  +   TC +Y   S + C++++ N   ++T +T +  R  C
Sbjct: 255 CPSTTAAGSVTVTSGTCTSYIADSSSNCAAWSTNGFCTNTFYTVAQRRSRC 305


>Z68118-6|CAA92187.1|  311|Caenorhabditis elegans Hypothetical
           protein R01E6.6 protein.
          Length = 311

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 89  SQFESKDRMRSSKASKELVAKRTEQMKK 172
           +  + KDR +SS+ SK +   RT+ M+K
Sbjct: 64  TSIKDKDRPKSSRESKNIEISRTKSMRK 91


>U97008-7|AAB52313.1|  385|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 293 protein.
          Length = 385

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -1

Query: 359 TCVAYSDYSMTVCSSFTKNSITSSTVFTASVSRPSC 252
           +C  Y   S T C+++  N   ++T +T +  + SC
Sbjct: 343 SCTNYQADSSTACAAWAGNGFCTNTFYTEAQRKASC 378


>AC024844-6|AAK29956.1|  442|Caenorhabditis elegans Hypothetical
           protein Y65B4A.1 protein.
          Length = 442

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 19/61 (31%), Positives = 32/61 (52%)
 Frame = +2

Query: 89  SQFESKDRMRSSKASKELVAKRTEQMKKFTEYRESKIQEWNEQKPRRLELRDYVDKTVLT 268
           ++FE K     ++  ++L A    Q K++ E +++KI EW   KPR    R   D TV+ 
Sbjct: 262 ARFEMKGDFDPARKRRKLTAA---QKKRYME-QQNKIFEWTPDKPR--NYRPKSDCTVIV 315

Query: 269 R 271
           +
Sbjct: 316 K 316


>Z81529-7|CAB04292.1|  248|Caenorhabditis elegans Hypothetical
           protein F35E8.9 protein.
          Length = 248

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -1

Query: 359 TCVAYSDYSMTVCSSFTKNSITSSTVFTASVSRPSC 252
           TC +Y   S T C +++ N   ++T +T +  R  C
Sbjct: 206 TCSSYIADSSTACRAWSLNGFCTNTFYTLAQRRSYC 241


>AF016445-9|AAC69061.1|  156|Caenorhabditis elegans Hypothetical
           protein T05B4.13 protein.
          Length = 156

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = -1

Query: 359 TCVAYSDYSMTVCSSFTKNSITSSTVFTASVSRPSC 252
           TC +Y+  S ++CS +  N   ++  +T++  +  C
Sbjct: 114 TCTSYNADSSSLCSDWAANGFCTNAFYTSAQRKSYC 149


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,576,205
Number of Sequences: 27780
Number of extensions: 176016
Number of successful extensions: 491
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)