Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf1006
(575 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g27640.1 68418.m03311 eukaryotic translation initiation facto... 34 0.078
At4g20700.1 68417.m03008 hypothetical protein 29 1.7
At4g20650.1 68417.m03004 receptor-like protein kinase-related co... 29 1.7
At4g20640.1 68417.m03003 receptor-like protein kinase-related re... 29 1.7
At4g20630.1 68417.m03002 receptor-like protein kinase-related re... 29 1.7
At4g20620.1 68417.m03001 receptor-like protein kinase-related re... 29 1.7
At4g20610.1 68417.m03000 receptor-like protein kinase-related re... 29 1.7
At4g20600.1 68417.m02999 receptor-like protein kinase-related re... 29 1.7
At4g20590.1 68417.m02998 receptor-like protein kinase-related re... 29 1.7
At4g20580.1 68417.m02997 receptor-like protein kinase-related re... 29 1.7
At4g20570.1 68417.m02996 receptor-like protein kinase-related re... 29 1.7
At4g20560.1 68417.m02995 receptor-like protein kinase-related re... 29 1.7
At4g20550.1 68417.m02994 receptor-like protein kinase-related re... 29 1.7
At4g20540.1 68417.m02993 receptor-like protein kinase-related re... 29 1.7
At4g20530.1 68417.m02992 receptor-like protein kinase-related ki... 29 1.7
At4g20520.1 68417.m02991 hypothetical protein 29 1.7
At4g11160.1 68417.m01808 translation initiation factor IF-2, mit... 29 1.7
At5g25780.1 68418.m03060 eukaryotic translation initiation facto... 29 2.2
At1g72650.2 68414.m08402 myb family transcription factor contain... 29 2.2
At5g54480.1 68418.m06784 hypothetical protein 29 2.9
At5g17680.1 68418.m02072 disease resistance protein (TIR-NBS-LRR... 28 5.1
At4g13360.1 68417.m02089 enoyl-CoA hydratase/isomerase family pr... 28 5.1
At5g27230.1 68418.m03248 expressed protein ; expression support... 27 6.8
At1g18710.1 68414.m02334 myb family transcription factor (MYB47)... 27 6.8
At2g28620.1 68415.m03479 kinesin motor protein-related 27 9.0
>At5g27640.1 68418.m03311 eukaryotic translation initiation factor 3
subunit 9 / eIF-3 eta / eIF3b (TIF3B1) nearly identical
to SP|Q9C5Z1 Eukaryotic translation initiation factor 3
subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b) {Arabidopsis
thaliana}
Length = 712
Score = 33.9 bits (74), Expect = 0.078
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Frame = +2
Query: 5 QFHWRPRPPTLLSXXXXXXXXXXXXXYYSQFESKDRMRSSKASKELVAKRTEQMKKFTEY 184
Q WRPRPP+ L+ Y ++E++D+ S L + E+ K E
Sbjct: 601 QLAWRPRPPSFLTAEKEEEIAKTLKKYSKKYEAEDQ----DVSLLLSEQDREKRKALKEE 656
Query: 185 RESKIQEW----NEQKPRRLELRD 244
E + +W E+K R LRD
Sbjct: 657 WEKWVMQWKSLHEEEKLVRQNLRD 680
>At4g20700.1 68417.m03008 hypothetical protein
Length = 529
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 158 EQMKKFTEYRESKIQEWNEQKPRRLELRDYVDKTVLTRMR*IQSKRL 298
E +K+ E + E + RRLE ++V ++ L +M + KRL
Sbjct: 353 EMKRKYDELAGRALSEMKRLRERRLEYAEFVRRSALDKMAELVQKRL 399
>At4g20650.1 68417.m03004 receptor-like protein kinase-related
contains Pfam profile: PF01657 Domain of unknown
function; receptor-like protein kinase homolog RK20-1,
Phaseolus vulgaris, gb:AF078082; does not contain a stop
codon. contains Pfam profile: PF01657 Domain of unknown
function that is usually associated with protein kinase
domain Pfam:PF00069
Length = 382
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 158 EQMKKFTEYRESKIQEWNEQKPRRLELRDYVDKTVLTRMR*IQSKRL 298
E +K+ E + E + RRLE ++V ++ L +M + KRL
Sbjct: 316 EMKRKYDELAGRALSEMKRLRERRLEYAEFVRRSALDKMAELVQKRL 362
>At4g20640.1 68417.m03003 receptor-like protein kinase-related
receptor-like protein kinase homolog RK20-1, Phaseolus
vulgaris, gb:AF078082 contains Pfam profile: PF01657
Domain of unknown function that is usually associated
with protein kinase domain Pfam:PF00069
Length = 468
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 158 EQMKKFTEYRESKIQEWNEQKPRRLELRDYVDKTVLTRMR*IQSKRL 298
E +K+ E + E + RRLE ++V ++ L +M + KRL
Sbjct: 316 EMKRKYDELAGRALSEMKRLRERRLEYAEFVRRSALDKMAELVQKRL 362
>At4g20630.1 68417.m03002 receptor-like protein kinase-related
receptor-like protein kinase homolog RK20-1, Phaseolus
vulgaris, gb:AF078082 contains Pfam profile: PF01657
Domain of unknown function that is usually associated
with protein kinase domain Pfam:PF00069
Length = 468
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 158 EQMKKFTEYRESKIQEWNEQKPRRLELRDYVDKTVLTRMR*IQSKRL 298
E +K+ E + E + RRLE ++V ++ L +M + KRL
Sbjct: 316 EMKRKYDELAGRALSEMKRLRERRLEYAEFVRRSALDKMAELVQKRL 362
>At4g20620.1 68417.m03001 receptor-like protein kinase-related
receptor-like protein kinase homolog RK20-1, Phaseolus
vulgaris, gb:AF078082 contains Pfam profile: PF01657
Domain of unknown function that is usually associated
with protein kinase domain Pfam:PF00069
Length = 468
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 158 EQMKKFTEYRESKIQEWNEQKPRRLELRDYVDKTVLTRMR*IQSKRL 298
E +K+ E + E + RRLE ++V ++ L +M + KRL
Sbjct: 316 EMKRKYDELAGRALSEMKRLRERRLEYAEFVRRSALDKMAELVQKRL 362
>At4g20610.1 68417.m03000 receptor-like protein kinase-related
receptor-like protein kinase homolog RK20-1, Phaseolus
vulgaris, gb:AF078082 contains Pfam profile: PF01657
Domain of unknown function that is usually associated
with protein kinase domain Pfam:PF00069
Length = 468
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 158 EQMKKFTEYRESKIQEWNEQKPRRLELRDYVDKTVLTRMR*IQSKRL 298
E +K+ E + E + RRLE ++V ++ L +M + KRL
Sbjct: 316 EMKRKYDELAGRALSEMKRLRERRLEYAEFVRRSALDKMAELVQKRL 362
>At4g20600.1 68417.m02999 receptor-like protein kinase-related
receptor-like protein kinase homolog RK20-1, Phaseolus
vulgaris, gb:AF078082 contains Pfam profile: PF01657
Domain of unknown function that is usually associated
with protein kinase domain Pfam:PF00069
Length = 468
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 158 EQMKKFTEYRESKIQEWNEQKPRRLELRDYVDKTVLTRMR*IQSKRL 298
E +K+ E + E + RRLE ++V ++ L +M + KRL
Sbjct: 316 EMKRKYDELAGRALSEMKRLRERRLEYAEFVRRSALDKMAELVQKRL 362
>At4g20590.1 68417.m02998 receptor-like protein kinase-related
receptor-like protein kinase homolog RK20-1, Phaseolus
vulgaris, gb:AF078082 contains Pfam profile: PF01657
Domain of unknown function that is usually associated
with protein kinase domain Pfam:PF00069
Length = 468
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 158 EQMKKFTEYRESKIQEWNEQKPRRLELRDYVDKTVLTRMR*IQSKRL 298
E +K+ E + E + RRLE ++V ++ L +M + KRL
Sbjct: 316 EMKRKYDELAGRALSEMKRLRERRLEYAEFVRRSALDKMAELVQKRL 362
>At4g20580.1 68417.m02997 receptor-like protein kinase-related
receptor-like protein kinase homolog RK20-1, Phaseolus
vulgaris, gb:AF078082 contains Pfam profile: PF01657
Domain of unknown function that is usually associated
with protein kinase domain Pfam:PF00069
Length = 468
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 158 EQMKKFTEYRESKIQEWNEQKPRRLELRDYVDKTVLTRMR*IQSKRL 298
E +K+ E + E + RRLE ++V ++ L +M + KRL
Sbjct: 316 EMKRKYDELAGRALSEMKRLRERRLEYAEFVRRSALDKMAELVQKRL 362
>At4g20570.1 68417.m02996 receptor-like protein kinase-related
receptor-like protein kinase homolog RK20-1, Phaseolus
vulgaris, gb:AF078082 contains Pfam profile: PF01657
Domain of unknown function that is usually associated
with protein kinase domain Pfam:PF00069
Length = 468
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 158 EQMKKFTEYRESKIQEWNEQKPRRLELRDYVDKTVLTRMR*IQSKRL 298
E +K+ E + E + RRLE ++V ++ L +M + KRL
Sbjct: 316 EMKRKYDELAGRALSEMKRLRERRLEYAEFVRRSALDKMAELVQKRL 362
>At4g20560.1 68417.m02995 receptor-like protein kinase-related
receptor-like protein kinase homolog RK20-1, Phaseolus
vulgaris, gb:AF078082 contains Pfam profile: PF01657
Domain of unknown function that is usually associated
with protein kinase domain Pfam:PF00069
Length = 468
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 158 EQMKKFTEYRESKIQEWNEQKPRRLELRDYVDKTVLTRMR*IQSKRL 298
E +K+ E + E + RRLE ++V ++ L +M + KRL
Sbjct: 316 EMKRKYDELAGRALSEMKRLRERRLEYAEFVRRSALDKMAELVQKRL 362
>At4g20550.1 68417.m02994 receptor-like protein kinase-related
receptor-like protein kinase homolog RK20-1, Phaseolus
vulgaris, gb:AF078082 contains Pfam profile: PF01657
Domain of unknown function that is usually associated
with protein kinase domain Pfam:PF00069
Length = 468
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 158 EQMKKFTEYRESKIQEWNEQKPRRLELRDYVDKTVLTRMR*IQSKRL 298
E +K+ E + E + RRLE ++V ++ L +M + KRL
Sbjct: 316 EMKRKYDELAGRALSEMKRLRERRLEYAEFVRRSALDKMAELVQKRL 362
>At4g20540.1 68417.m02993 receptor-like protein kinase-related
receptor-like protein kinase homolog RK20-1, Phaseolus
vulgaris, gb:AF078082 contains Pfam profile: PF01657
Domain of unknown function that is usually associated
with protein kinase domain Pfam:PF00069
Length = 468
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 158 EQMKKFTEYRESKIQEWNEQKPRRLELRDYVDKTVLTRMR*IQSKRL 298
E +K+ E + E + RRLE ++V ++ L +M + KRL
Sbjct: 316 EMKRKYDELAGRALSEMKRLRERRLEYAEFVRRSALDKMAELVQKRL 362
>At4g20530.1 68417.m02992 receptor-like protein kinase-related
kinase like proteins, Arabidopsis contains Pfam profile:
PF01657 Domain of unknown function that is usually
associated with protein kinase domain Pfam:PF00069
Length = 468
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 158 EQMKKFTEYRESKIQEWNEQKPRRLELRDYVDKTVLTRMR*IQSKRL 298
E +K+ E + E + RRLE ++V ++ L +M + KRL
Sbjct: 316 EMKRKYDELAGRALSEMKRLRERRLEYAEFVRRSALDKMAELVQKRL 362
>At4g20520.1 68417.m02991 hypothetical protein
Length = 376
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 158 EQMKKFTEYRESKIQEWNEQKPRRLELRDYVDKTVLTRMR*IQSKRL 298
E +K+ E + E + RRLE ++V ++ L +M + KRL
Sbjct: 224 EMKRKYDELAGRALSEMKRLRERRLEYAEFVRRSALDKMAELVQKRL 270
>At4g11160.1 68417.m01808 translation initiation factor IF-2,
mitochondrial, putative similar to SP|P46198|IF2M_BOVIN
Translation initiation factor IF-2, mitochondrial
precursor (IF-2Mt) (IF-2(Mt)) {Bos taurus}
Length = 743
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 86 YSQFESKDRMRSSKASKELVAKRTEQMKKFTEYRESKIQ 202
Y F ++ +R AS+E +AKR E + +RE K Q
Sbjct: 69 YESFPTETSIRYFHASRETLAKRKEDADRLLSHRERKKQ 107
>At5g25780.1 68418.m03060 eukaryotic translation initiation factor 3
subunit 9, putative / eIF-3 eta, putative / eIF3b,
putative nearly identical to SP|Q9C5Z1 Eukaryotic
translation initiation factor 3 subunit 9 (eIF-3 eta)
(eIF3 p110) (eIF3b) {Arabidopsis thaliana}
Length = 714
Score = 29.1 bits (62), Expect = 2.2
Identities = 20/80 (25%), Positives = 35/80 (43%)
Frame = +2
Query: 5 QFHWRPRPPTLLSXXXXXXXXXXXXXYYSQFESKDRMRSSKASKELVAKRTEQMKKFTEY 184
Q WRPRP + L+ Y ++E++D+ S S++ KR +++ ++
Sbjct: 602 QLAWRPRPASFLTAEKEEEIAKNLRNYSKRYEAEDQDVSLLLSEQDREKRRALNEEWQKW 661
Query: 185 RESKIQEWNEQKPRRLELRD 244
E+K R LRD
Sbjct: 662 VMQWKSLHEEEKLVRQNLRD 681
>At1g72650.2 68414.m08402 myb family transcription factor contains
Pfam PF00249: Myb-like DNA-binding domain
Length = 630
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +2
Query: 89 SQFESKDRMRSSKASKELVAKRTEQMKKFTEYRESKIQEWNEQKPRRLE 235
SQ ES + + S + V T+Q+K +EY E +Q+ +++ RLE
Sbjct: 115 SQIESSEAINSGLLHSDNVQPYTDQVKSRSEYNEEMLQKVEQEE--RLE 161
>At5g54480.1 68418.m06784 hypothetical protein
Length = 720
Score = 28.7 bits (61), Expect = 2.9
Identities = 19/51 (37%), Positives = 29/51 (56%)
Frame = +2
Query: 98 ESKDRMRSSKASKELVAKRTEQMKKFTEYRESKIQEWNEQKPRRLELRDYV 250
E K RMR+ + SKEL K+T+++++ R S N +P L LR+ V
Sbjct: 620 EEKQRMRTERLSKEL-EKKTKELEEIRGTRGSSPTS-NMVEPELLFLRESV 668
>At5g17680.1 68418.m02072 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1294
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +2
Query: 122 SKASKELVAKRTEQMKKFTEYRESKIQEWNEQKPRRLELRDYVDKTVLT 268
S + KE V K E +KK + W++ K + ++D DK V T
Sbjct: 129 SHSDKEKVGKWKEALKKLAAISGEDSRNWDDSKLIKKIVKDISDKLVST 177
>At4g13360.1 68417.m02089 enoyl-CoA hydratase/isomerase family
protein similar to CoA-thioester hydrolase CHY1
(beta-hydroxyisobutyryl-CoA hydrolase) [Arabidopsis
thaliana] GI:8572760; contains Pfam profile PF00378:
enoyl-CoA hydratase/isomerase family protein
Length = 381
Score = 27.9 bits (59), Expect = 5.1
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +2
Query: 113 MRSSKASKELVAKRTEQMKKFTEYRESKIQEWNEQKPRRLE 235
+ S+ +S + + + E++KK+ + ES + EW + + LE
Sbjct: 244 IESAFSSNKSIKETIEELKKYQQSTESSVVEWANEALKGLE 284
>At5g27230.1 68418.m03248 expressed protein ; expression supported
by MPSS
Length = 948
Score = 27.5 bits (58), Expect = 6.8
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +2
Query: 89 SQFESKDRM--RSSKASKELVAKRTEQMKKFTEYRESKIQEWNEQKPRRLELR 241
S+FE K++ KA E + EQ++KFT ES ++ +++K L LR
Sbjct: 93 SEFEKKEKDFDLEQKAEVEKRKREVEQLEKFTTRMES-VERVSDEKLMELGLR 144
>At1g18710.1 68414.m02334 myb family transcription factor (MYB47)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 267
Score = 27.5 bits (58), Expect = 6.8
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +2
Query: 89 SQFESKDRMRSSKASKELVAKRTEQMKKFTEYRESK-IQEWNEQKPRRLELRDYVDKTVL 265
S ES D+ + + +E +R M + + E + IQ W E++ RRL D +D +
Sbjct: 190 SIIESSDQAKEEEEKEEEEEERDSMMGQKIDGSEGEDIQIWGEEEVRRLMEIDAMDMYEM 249
Query: 266 T 268
T
Sbjct: 250 T 250
>At2g28620.1 68415.m03479 kinesin motor protein-related
Length = 1076
Score = 27.1 bits (57), Expect = 9.0
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Frame = +2
Query: 104 KDRMRSSKASKELVAKRTEQMKKFTEYRESKI---QE-WNEQKPRRLELRDYVDKT 259
K+R +A K+ +A + EQM+ E ++ +I QE +N ++ LR+ +DKT
Sbjct: 435 KERYTQEEAEKKAMADKIEQMEVEGEAKDKQIIDLQELYNSEQLVTAGLREKLDKT 490
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,733,088
Number of Sequences: 28952
Number of extensions: 156174
Number of successful extensions: 445
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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