Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1002
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    27   2.9  
SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces po...    27   3.8  
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S...    26   5.0  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    26   5.0  
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz...    25   8.7  

>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -2

Query: 264 LITKLFRWLLNYFLCVSSYIRCSKKRIQLVSMYYFQ 157
           ++T LF W +  FL  ++YI    K IQ++S   F+
Sbjct: 439 IVTDLFGWSVFDFLKNNNYIPFPLKHIQMLSQQLFK 474


>SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +3

Query: 459 FHCRFIRTSISRFRKSAYCYVKYT-SMVLF*LVYY-AYSAIIIITLPLPVPSPDEKRG 626
           F C++   S++ F K +Y Y  YT    +F + +  A   II +      PS DEK G
Sbjct: 193 FECKYELDSLASFLKLSYTYWLYTKDQSIFTVKWLAAVERIIQVLEEQSSPSFDEKTG 250


>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 521 KIY*YGFILISLLRLLCHYNYNSAIAGPK 607
           K Y Y  ++I L+  LC++ YN+ +  PK
Sbjct: 2   KTYEYVLLVIILILSLCYFIYNNFLNKPK 30


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 417 LFKVTWLVLTWHILFHIAKL*RALQKTIN 331
           LF  +W +L  HILFH+ K   AL + +N
Sbjct: 870 LFLESWSILN-HILFHVYKKKYALWEQVN 897


>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 674

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 153 VIENNTWKLIVYVFLN 200
           V+E N W+  VY++LN
Sbjct: 352 VVEKNAWRRYVYIWLN 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,203,286
Number of Sequences: 5004
Number of extensions: 70210
Number of successful extensions: 157
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)