Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1002
         (751 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56213| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.19 
SB_53803| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_12462| Best HMM Match : Kinesin (HMM E-Value=0)                     29   4.0  
SB_57119| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.4e-20)        29   5.3  
SB_3991| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.3  

>SB_56213| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 206

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -2

Query: 408 VTWLVLTWHILFHIAKL*RALQKTINRNRLIY-NTPVCFSNCICCCNASLITKL 250
           VTW+V +W  + H+ +L   +Q T+N   L Y     CFS      N S I+ +
Sbjct: 11  VTWIVPSWEPVRHVEQLSDEVQSTLNTGCLWYGRLRTCFSTISTVYNISTISTI 64


>SB_53803| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 619

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 181 ISFHVLFSITPFWFLTSQIKYQQGPMYF 98
           +  +VL+S +P W+  S + Y Q PM++
Sbjct: 8   LRLNVLYSQSPMWYSQSPMWYPQSPMWY 35


>SB_12462| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 803

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +3

Query: 600 VPSPDEKRGGLASVCHLPGR--KNITPSNGWRSTNP 701
           +P+P    GGL    + PGR  K+  PSN  RST+P
Sbjct: 659 LPTPGVMPGGLTPGGNTPGRGRKSPNPSNWGRSTSP 694


>SB_57119| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.4e-20)
          Length = 1423

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -2

Query: 408 VTWLVLTWHILFHIAKL*RALQKTINRNRLIYNTPVCFSNCICCCNAS 265
           V W++L       I ++  A  +  NR+ L++  PVC  + +   NAS
Sbjct: 218 VLWVILDCRSEIGIIRVTIASTRVDNRSSLLFRVPVCLQSIMLSPNAS 265


>SB_3991| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 287

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -2

Query: 303 VCFSNCICCCNASLITKLFRWLLNYFLCVSSYIRCSKKRIQLVS 172
           VC  NC C  N ++     RW  +   C++ +  C +K I ++S
Sbjct: 142 VCIDNCTCRDNGTVYHNGDRWKHSNNTCITCH--CQRKYILVIS 183


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,319,635
Number of Sequences: 59808
Number of extensions: 497485
Number of successful extensions: 868
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)