Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1002
         (751 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48006-5|CAA88049.1|  251|Caenorhabditis elegans Hypothetical pr...    28   8.1  
U00032-10|AAA50637.1|  418|Caenorhabditis elegans Hypothetical p...    28   8.1  

>Z48006-5|CAA88049.1|  251|Caenorhabditis elegans Hypothetical
           protein F19C6.5 protein.
          Length = 251

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -3

Query: 515 TICRFSKTTY*RTYEAAMETVLRNSILIHGFCYY 414
           T+C F      R+Y +++ T  + + L+HGF Y+
Sbjct: 156 TLCHFRTWQRERSYHSSLYTGSKRNQLMHGFVYH 189


>U00032-10|AAA50637.1|  418|Caenorhabditis elegans Hypothetical
           protein F37A4.9 protein.
          Length = 418

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +2

Query: 383 CHVSTNHVTLN-SSRNRVSKYYSVELFPLPLHTYVNKSF*KIG 508
           CH++ N VT+N S     SK++S+++    ++ Y+      IG
Sbjct: 128 CHLNKNLVTINRSGIVTASKFFSLDILRSAMNVYIPNDILTIG 170


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,591,125
Number of Sequences: 27780
Number of extensions: 393441
Number of successful extensions: 755
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)