Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1002
         (751 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    24   1.3  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    22   5.3  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    22   5.3  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    22   5.3  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    22   5.3  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    22   7.1  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -3

Query: 455 VLRNSILIHGFCYYSRLRGWY*RGIFCFT*LNCDVLYKKQLTE 327
           + RN +L+ G C  SR  G +      F  +    L K+QL E
Sbjct: 40  ISRNRVLLRGQCISSRRNGRHNVHSLAFGAIQLRQLLKRQLCE 82


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 549 LVYYAYSAIIIITLPLPVPSP 611
           L YY  + I  I +P+PVP P
Sbjct: 100 LQYYNINYIEQIPVPVPVPVP 120


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 549 LVYYAYSAIIIITLPLPVPSP 611
           L YY  + I  I +P+PVP P
Sbjct: 100 LQYYNINYIEQIPVPVPVPVP 120


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 549 LVYYAYSAIIIITLPLPVPSP 611
           L YY  + I  I +P+PVP P
Sbjct: 100 LQYYNINYIEQIPVPVPVPVP 120


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 549 LVYYAYSAIIIITLPLPVPSP 611
           L YY  + I  I +P+PVP P
Sbjct: 333 LQYYNINYIEQIPVPVPVPVP 353


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 549 LVYYAYSAIIIITLPLPVPSP 611
           L YY  + I  I +P+P+P P
Sbjct: 100 LQYYNINYIEQIPVPVPIPVP 120


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,167
Number of Sequences: 438
Number of extensions: 5303
Number of successful extensions: 22
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)