Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1002
         (751 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g35460.1 68415.m04344 harpin-induced family protein / HIN1 fa...    30   1.9  
At5g41390.1 68418.m05029 hypothetical protein contains 1 predict...    29   3.3  

>At2g35460.1 68415.m04344 harpin-induced family protein / HIN1
           family protein / harpin-responsive family protein
           similar to  harpin-induced protein hin1 ( GI:1619321)
           [Nicotiana tabacum];
          Length = 238

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -2

Query: 300 CFSNCICCCNASLITKLFRWLLNYFLCV 217
           CFS+C+ CC   L+  +   L+   +C+
Sbjct: 38  CFSSCLLCCGGCLVNIICNILIGVLVCL 65


>At5g41390.1 68418.m05029 hypothetical protein contains 1 predicted
           transmembrane domain;
          Length = 297

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -2

Query: 312 NTPVCFSNCIC--CCNASLITKLFRWLLNYFLCVSSYIRCSKK 190
           +TP CF +C+C  C +  L  +     ++ + C   Y+ CS K
Sbjct: 32  DTPYCFFSCLCGPCVSYLLRKRALYNDMSRYTCCGGYMPCSGK 74


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,153,688
Number of Sequences: 28952
Number of extensions: 346292
Number of successful extensions: 718
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)