Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1001
         (490 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13467| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.001
SB_7775| Best HMM Match : No HMM Matches (HMM E-Value=.)               37   0.010
SB_48730| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.13 
SB_6393| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-28)                  27   6.3  
SB_46486| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.7)            27   8.3  

>SB_13467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 38

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 17/25 (68%), Positives = 18/25 (72%)
 Frame = -3

Query: 254 PPSGFPLTST*PGIVHHLSGPSICA 180
           PP  FPL S   GIVHHLSGP+ CA
Sbjct: 5   PPPEFPLASPYSGIVHHLSGPNRCA 29


>SB_7775| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 36.7 bits (81), Expect = 0.010
 Identities = 18/26 (69%), Positives = 19/26 (73%)
 Frame = -2

Query: 255 ASIRVSPDFDLTRHSSPSFGSQHLCS 178
           AS RVS  F L RHSSPSFGSQ + S
Sbjct: 39  ASTRVSSGFTLFRHSSPSFGSQQMRS 64


>SB_48730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 178

 Score = 33.1 bits (72), Expect = 0.13
 Identities = 16/22 (72%), Positives = 17/22 (77%)
 Frame = -2

Query: 315 ISLSPLYPVPTIDLHVRIATAS 250
           ISLSPLYP  TIDLHVR  + S
Sbjct: 38  ISLSPLYPNLTIDLHVRSNSCS 59


>SB_6393| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-28)
          Length = 307

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -3

Query: 212 VHHLSGPSICAQSAPSFTDWKRDASGVRKSR 120
           V  L+  S+C Q APSF + K+ AS VR ++
Sbjct: 183 VRKLAKISLCDQYAPSFKEKKKMASEVRVAK 213


>SB_46486| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.7)
          Length = 703

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +2

Query: 173 RSEHKCWDPKD--GELCLVRSKSGETLMEAVAILTCKSIVGTGYRGERLIEPSSSWFRPK 346
           +++  C D ++  GE     +KS +T     ++ +C+S++ TG   + L +   S  RP+
Sbjct: 303 QNDLSCSDSENEGGESFSTTAKSKDTKANDYSMTSCRSVLATGLNEQSLAKRKESIRRPE 362


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,508,312
Number of Sequences: 59808
Number of extensions: 291907
Number of successful extensions: 700
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)