Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf1001
(490 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT012669-1|AAT08475.1| 46|Drosophila melanogaster LD48059p pro... 46 4e-05
BT010292-1|AAQ23610.1| 662|Drosophila melanogaster LD16296p pro... 29 3.4
BT001262-1|AAN71018.1| 833|Drosophila melanogaster AT02677p pro... 29 3.4
AE014134-226|AAF51398.3| 662|Drosophila melanogaster CG4896-PB,... 29 3.4
AE014134-225|AAF51399.3| 662|Drosophila melanogaster CG4896-PA,... 29 3.4
AE014134-224|AAN10483.2| 949|Drosophila melanogaster CG4896-PD,... 29 3.4
AE014134-223|AAN10482.2| 968|Drosophila melanogaster CG4896-PC,... 29 3.4
L77907-1|AAC37264.1| 1883|Drosophila melanogaster chromodomain-h... 29 4.5
BT011071-1|AAR82736.1| 1645|Drosophila melanogaster SD21488p pro... 29 4.5
AY095050-1|AAM11378.1| 1101|Drosophila melanogaster LD39323p pro... 29 4.5
AE014297-2064|AAF55213.2| 636|Drosophila melanogaster CG33207-P... 29 4.5
AE014134-528|AAF51170.1| 1883|Drosophila melanogaster CG3733-PA ... 29 4.5
AB081475-1|BAC06341.1| 636|Drosophila melanogaster transmembran... 29 4.5
>BT012669-1|AAT08475.1| 46|Drosophila melanogaster LD48059p
protein.
Length = 46
Score = 45.6 bits (103), Expect = 4e-05
Identities = 20/25 (80%), Positives = 21/25 (84%)
Frame = +2
Query: 179 EHKCWDPKDGELCLVRSKSGETLME 253
EH C DPKDGEL L+R KSGETLME
Sbjct: 9 EHICCDPKDGELYLIRLKSGETLME 33
>BT010292-1|AAQ23610.1| 662|Drosophila melanogaster LD16296p
protein.
Length = 662
Score = 29.1 bits (62), Expect = 3.4
Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Frame = +3
Query: 75 NARRSLREDEIIELRSRFSHSRGVS--FPISE*RRALSTNAGTRKMVNYAWS-GRSQGKP 245
N R E EI L+SR S G + PIS STN G+R M WS G+ GK
Sbjct: 562 NRSRERFEQEIKTLQSRQKDSFGATAAMPIS------STNVGSRLMQKMGWSEGQGLGKK 615
Query: 246 *WRP*RF*RAN-RSSELGIGAKD*SNHLVAGS 338
A+ RS+ +G+G + H+ G+
Sbjct: 616 NQGRTEIIEADGRSNNVGLGNN--TGHMAPGN 645
>BT001262-1|AAN71018.1| 833|Drosophila melanogaster AT02677p
protein.
Length = 833
Score = 29.1 bits (62), Expect = 3.4
Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Frame = +3
Query: 75 NARRSLREDEIIELRSRFSHSRGVS--FPISE*RRALSTNAGTRKMVNYAWS-GRSQGKP 245
N R E EI L+SR S G + PIS STN G+R M WS G+ GK
Sbjct: 733 NRSRERFEQEIKTLQSRQKDSFGATAAMPIS------STNVGSRLMQKMGWSEGQGLGKK 786
Query: 246 *WRP*RF*RAN-RSSELGIGAKD*SNHLVAGS 338
A+ RS+ +G+G + H+ G+
Sbjct: 787 NQGRTEIIEADGRSNNVGLGNN--TGHMAPGN 816
>AE014134-226|AAF51398.3| 662|Drosophila melanogaster CG4896-PB,
isoform B protein.
Length = 662
Score = 29.1 bits (62), Expect = 3.4
Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Frame = +3
Query: 75 NARRSLREDEIIELRSRFSHSRGVS--FPISE*RRALSTNAGTRKMVNYAWS-GRSQGKP 245
N R E EI L+SR S G + PIS STN G+R M WS G+ GK
Sbjct: 562 NRSRERFEQEIKTLQSRQKDSFGATAAMPIS------STNVGSRLMQKMGWSEGQGLGKK 615
Query: 246 *WRP*RF*RAN-RSSELGIGAKD*SNHLVAGS 338
A+ RS+ +G+G + H+ G+
Sbjct: 616 NQGRTEIIEADGRSNNVGLGNN--TGHMAPGN 645
>AE014134-225|AAF51399.3| 662|Drosophila melanogaster CG4896-PA,
isoform A protein.
Length = 662
Score = 29.1 bits (62), Expect = 3.4
Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Frame = +3
Query: 75 NARRSLREDEIIELRSRFSHSRGVS--FPISE*RRALSTNAGTRKMVNYAWS-GRSQGKP 245
N R E EI L+SR S G + PIS STN G+R M WS G+ GK
Sbjct: 562 NRSRERFEQEIKTLQSRQKDSFGATAAMPIS------STNVGSRLMQKMGWSEGQGLGKK 615
Query: 246 *WRP*RF*RAN-RSSELGIGAKD*SNHLVAGS 338
A+ RS+ +G+G + H+ G+
Sbjct: 616 NQGRTEIIEADGRSNNVGLGNN--TGHMAPGN 645
>AE014134-224|AAN10483.2| 949|Drosophila melanogaster CG4896-PD,
isoform D protein.
Length = 949
Score = 29.1 bits (62), Expect = 3.4
Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Frame = +3
Query: 75 NARRSLREDEIIELRSRFSHSRGVS--FPISE*RRALSTNAGTRKMVNYAWS-GRSQGKP 245
N R E EI L+SR S G + PIS STN G+R M WS G+ GK
Sbjct: 849 NRSRERFEQEIKTLQSRQKDSFGATAAMPIS------STNVGSRLMQKMGWSEGQGLGKK 902
Query: 246 *WRP*RF*RAN-RSSELGIGAKD*SNHLVAGS 338
A+ RS+ +G+G + H+ G+
Sbjct: 903 NQGRTEIIEADGRSNNVGLGNN--TGHMAPGN 932
>AE014134-223|AAN10482.2| 968|Drosophila melanogaster CG4896-PC,
isoform C protein.
Length = 968
Score = 29.1 bits (62), Expect = 3.4
Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Frame = +3
Query: 75 NARRSLREDEIIELRSRFSHSRGVS--FPISE*RRALSTNAGTRKMVNYAWS-GRSQGKP 245
N R E EI L+SR S G + PIS STN G+R M WS G+ GK
Sbjct: 868 NRSRERFEQEIKTLQSRQKDSFGATAAMPIS------STNVGSRLMQKMGWSEGQGLGKK 921
Query: 246 *WRP*RF*RAN-RSSELGIGAKD*SNHLVAGS 338
A+ RS+ +G+G + H+ G+
Sbjct: 922 NQGRTEIIEADGRSNNVGLGNN--TGHMAPGN 951
>L77907-1|AAC37264.1| 1883|Drosophila melanogaster
chromodomain-helicase-DNA-bindingprotein protein.
Length = 1883
Score = 28.7 bits (61), Expect = 4.5
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -3
Query: 212 VHHLSGPSICAQSAPSFTDWKRD 144
+HHL GP +C + T W+R+
Sbjct: 573 IHHLYGPFLCVVPLSTMTAWQRE 595
>BT011071-1|AAR82736.1| 1645|Drosophila melanogaster SD21488p
protein.
Length = 1645
Score = 28.7 bits (61), Expect = 4.5
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -3
Query: 212 VHHLSGPSICAQSAPSFTDWKRD 144
+HHL GP +C + T W+R+
Sbjct: 573 IHHLYGPFLCVVPLSTMTAWQRE 595
>AY095050-1|AAM11378.1| 1101|Drosophila melanogaster LD39323p
protein.
Length = 1101
Score = 28.7 bits (61), Expect = 4.5
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -3
Query: 212 VHHLSGPSICAQSAPSFTDWKRD 144
+HHL GP +C + T W+R+
Sbjct: 41 IHHLYGPFLCVVPLSTMTAWQRE 63
>AE014297-2064|AAF55213.2| 636|Drosophila melanogaster CG33207-PB,
isoform B protein.
Length = 636
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -3
Query: 299 YTQFRRSICTSESLRPPSGFPLTST*PGIVHHLSGP 192
Y Q + +S+ PSG+P+T + P +V GP
Sbjct: 184 YQQHHSELLQGKSIHYPSGYPMTRSPPFLVSSSPGP 219
>AE014134-528|AAF51170.1| 1883|Drosophila melanogaster CG3733-PA
protein.
Length = 1883
Score = 28.7 bits (61), Expect = 4.5
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -3
Query: 212 VHHLSGPSICAQSAPSFTDWKRD 144
+HHL GP +C + T W+R+
Sbjct: 573 IHHLYGPFLCVVPLSTMTAWQRE 595
>AB081475-1|BAC06341.1| 636|Drosophila melanogaster transmembrane
protein Pxb protein.
Length = 636
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -3
Query: 299 YTQFRRSICTSESLRPPSGFPLTST*PGIVHHLSGP 192
Y Q + +S+ PSG+P+T + P +V GP
Sbjct: 184 YQQHHSELLQGKSIHYPSGYPMTRSPPFLVSSSPGP 219
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,046,261
Number of Sequences: 53049
Number of extensions: 430077
Number of successful extensions: 1107
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1107
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1726192251
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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