Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1001
         (490 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68117-1|CAA92181.2|  459|Caenorhabditis elegans Hypothetical pr...    30   0.78 
AC006624-7|AAF39787.1|  642|Caenorhabditis elegans Hypothetical ...    28   4.2  
AF068716-7|AAC17746.1|  384|Caenorhabditis elegans Hypothetical ...    27   9.7  

>Z68117-1|CAA92181.2|  459|Caenorhabditis elegans Hypothetical
           protein F45E6.3 protein.
          Length = 459

 Score = 30.3 bits (65), Expect = 0.78
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 51  KGVTKVKANARRSLREDEIIELRSRFSHSRGVSFPIS 161
           K ++++  + RR   E +  +L SRF H  G+ +P+S
Sbjct: 116 KVLSQIDKDVRRLYPEIQFFQLLSRFPHQHGMKYPLS 152


>AC006624-7|AAF39787.1|  642|Caenorhabditis elegans Hypothetical
           protein C53D5.5 protein.
          Length = 642

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
 Frame = +2

Query: 164 MKARSEHKCWDPKDGELCLVRSKSGETLMEAVA-----ILTCKSIVGTGYRGERL---IE 319
           M ++S    ++ K  EL  V    G T++  VA      L  K+ V       R+   ++
Sbjct: 521 MSSQSPLVIFNTKGAELMAVGGAGGSTIISGVAGVALHALWLKADVKQAVDAPRMHNQLQ 580

Query: 320 PSSSWFRPKFPSG*LASI 373
           P+ +W+ P FP   + S+
Sbjct: 581 PNYTWYEPNFPKAYVKSL 598


>AF068716-7|AAC17746.1|  384|Caenorhabditis elegans Hypothetical
           protein F26D11.2 protein.
          Length = 384

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +1

Query: 85  VRSGRMKLSSY-VRDFRTPEASRFQSVN 165
           ++S R++ + Y VR F  PE +RF S+N
Sbjct: 327 IKSFRVETADYTVRAFADPEKTRFSSIN 354


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,725,040
Number of Sequences: 27780
Number of extensions: 218961
Number of successful extensions: 419
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)