Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf1001
         (490 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57580.1 68418.m07194 calmodulin-binding protein similar to c...    28   3.9  
At5g05570.1 68418.m00605 transducin family protein / WD-40 repea...    27   5.1  
At3g22790.1 68416.m02873 kinase interacting family protein simil...    27   6.8  
At2g38320.1 68415.m04708 expressed protein                             27   6.8  
At5g61270.1 68418.m07689 basic helix-loop-helix (bHLH) family pr...    27   9.0  

>At5g57580.1 68418.m07194 calmodulin-binding protein similar to
           calmodulin-binding protein TCB60 GI:1698548 from
           [Nicotiana tabacum]
          Length = 647

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +2

Query: 191 WDPKDGELCLVRSKSGET-LMEAVAILTCKSIVGTGYRGERLIEPSSSWFRPK 346
           W  ++ E  +V+ +SG+  L+     +T K  VGT   GE +   +SSW R +
Sbjct: 160 WTQEEFESHVVKERSGKRPLLTGEVYVTLKEGVGT--LGELVFTDNSSWIRSR 210


>At5g05570.1 68418.m00605 transducin family protein / WD-40 repeat
           family protein similar to unknown protein (pir||T04661);
           contains Pfam PF00400: WD domain, G-beta repeat (4
           copies, 2 weak)|8683726|gb|AV524198.1|AV524198
          Length = 1124

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 15/28 (53%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
 Frame = -2

Query: 324 DGSISLSPL-YP--VPTIDLHVRIATAS 250
           +  IS+SPL YP  VPT+D H+ +AT S
Sbjct: 414 ENKISVSPLPYPMVVPTMDPHMTVATFS 441


>At3g22790.1 68416.m02873 kinase interacting family protein similar to
            kinase interacting protein 1 (GI:13936326) [Petunia
            integrifolia]
          Length = 1694

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 167  KARSEHKCWDPKDGELCLVRSKSGETLMEAVAI 265
            K +S H  +    GE+C++  ++G  L EA+A+
Sbjct: 1042 KNKSLHLKFSELKGEICILEEENGAILEEAIAL 1074


>At2g38320.1 68415.m04708 expressed protein
          Length = 410

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 416 RHWGRNDLNLFSNFKWVRTP 475
           RHW  +D+ +F+++ W R P
Sbjct: 215 RHWTNSDIIVFNSYLWWRMP 234


>At5g61270.1 68418.m07689 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 366

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = +3

Query: 342 RSFPQDSWRRYKILKQSHPVKRMIRGIGAETTSTYSQTLNG*ELRLTRT 488
           R +PQ+  R + + ++SH V   +    + T  +++   +G  L+  RT
Sbjct: 83  RGYPQEMDRWFAVQEESHRVGHSVTASASGTNMSWASFESGRSLKTART 131


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,245,286
Number of Sequences: 28952
Number of extensions: 209236
Number of successful extensions: 446
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)