Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0997
         (429 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom...    25   5.0  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    24   8.7  

>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 207 FIRMILVIINMGGYNLDFF 263
           F  + LV  NMGGY +D F
Sbjct: 296 FFHLYLVAPNMGGYLMDLF 314


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 138 GFNIEYRRGGFALIFLAEYSSILFIRMILVIINMGGYNLD 257
           G N    R G  L  ++ + SI F    L +IN   Y+LD
Sbjct: 463 GRNWTLSRDGMHLFAMSGFGSIFFASEYLDVINEVYYSLD 502


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 931,210
Number of Sequences: 5004
Number of extensions: 12124
Number of successful extensions: 32
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)