Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0988
         (482 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    24   0.85 
EF532798-1|ABQ08060.1|   50|Tribolium castaneum acetylcholineste...    21   6.0  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    21   7.9  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.8 bits (49), Expect = 0.85
 Identities = 6/22 (27%), Positives = 15/22 (68%)
 Frame = -1

Query: 71  HFQLKVNFFFWLNLLIRCIFFF 6
           HF L   +F++  +++ C+++F
Sbjct: 95  HFLLCTYYFYYAFIILLCVYYF 116



 Score = 20.6 bits (41), Expect = 7.9
 Identities = 6/21 (28%), Positives = 14/21 (66%)
 Frame = -1

Query: 68  FQLKVNFFFWLNLLIRCIFFF 6
           F L + +F+   +++ CI++F
Sbjct: 281 FLLCIYYFYCALIILLCIYYF 301


>EF532798-1|ABQ08060.1|   50|Tribolium castaneum
           acetylcholinesterase protein.
          Length = 50

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 420 PYNINLSHRGIDKDKDIVKCLVLVKIYG 337
           P  + + H G    ++  K  VLV IYG
Sbjct: 21  PQRLRIRHHGDKPPQERPKVPVLVWIYG 48


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = +2

Query: 440 HIFIHIIP 463
           HIF+HI+P
Sbjct: 60  HIFMHIVP 67


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,985
Number of Sequences: 336
Number of extensions: 1497
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11352204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)