Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0985
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   127   1e-30
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    80   3e-16
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    72   8e-14
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    71   2e-13
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    29   0.42 
SPBC19G7.16 |iws1||transcription elongation factor complex subun...    27   2.2  
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual        26   3.9  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    26   3.9  
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    26   5.1  
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    25   6.8  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  127 bits (307), Expect = 1e-30
 Identities = 54/72 (75%), Positives = 62/72 (86%)
 Frame = +2

Query: 41  MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASXGKYV 220
           MREIVHIQAGQCGNQ+GA FW  I+DEHG+D  G YHG S+ Q ER+NVY+NEA+ GKYV
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60

Query: 221 PRAILVDLEPGT 256
           PRA+LVDLEPGT
Sbjct: 61  PRAVLVDLEPGT 72



 Score =  109 bits (263), Expect = 2e-25
 Identities = 47/62 (75%), Positives = 55/62 (88%)
 Frame = +1

Query: 256 MDSVRSGPFGQIFRPDNFVF*QSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQG 435
           MD+V+SG FG +FRPDN ++ QSGAGN WAKGHYTEGAEL D+VLDVVR+EAE+CD LQG
Sbjct: 73  MDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVVRREAEACDALQG 132

Query: 436 FQ 441
           FQ
Sbjct: 133 FQ 134



 Score = 71.7 bits (168), Expect = 8e-14
 Identities = 31/41 (75%), Positives = 37/41 (90%)
 Frame = +3

Query: 504 QREYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENT 626
           + EYPDR+M T+SV P+PK SDTVVEPYNATLS+HQLVEN+
Sbjct: 156 REEYPDRMMATFSVAPAPKSSDTVVEPYNATLSMHQLVENS 196


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 79.8 bits (188), Expect = 3e-16
 Identities = 33/69 (47%), Positives = 50/69 (72%)
 Frame = +2

Query: 44  REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASXGKYVP 223
           REI+ +QAGQCGNQIG++FW+ +  EHGI P G     +   ++R +V++ ++   +Y+P
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62

Query: 224 RAILVDLEP 250
           RAIL+DLEP
Sbjct: 63  RAILIDLEP 71



 Score = 52.4 bits (120), Expect = 5e-08
 Identities = 22/68 (32%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
 Frame = +1

Query: 241 LGARHMDSVRSGPFGQIFRPDNFVF*QSG--AGNNWAKGHYTEGAELVDSVLDVVRKEAE 414
           L  R ++++ S  +G ++ P+N +  ++G  AGNNWA G Y+    + + ++D++ +EA+
Sbjct: 69  LEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDMIDREAD 127

Query: 415 SCDCLQGF 438
             D L+GF
Sbjct: 128 GSDSLEGF 135



 Score = 42.3 bits (95), Expect = 6e-05
 Identities = 20/38 (52%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
 Frame = +3

Query: 513 YPDRIMNTYSVVP-SPKVSDTVVEPYNATLSVHQLVEN 623
           YP +I+ TYSV P S  VSD VV+PYN+ L++ +L  N
Sbjct: 161 YPKKIIQTYSVFPNSQSVSDVVVQPYNSLLALKRLTLN 198


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 71.7 bits (168), Expect = 8e-14
 Identities = 29/61 (47%), Positives = 44/61 (72%)
 Frame = +1

Query: 256 MDSVRSGPFGQIFRPDNFVF*QSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQG 435
           +D VR+GP+  +F P+  V  +  A NN+A+GHYT G E++DSVL+ +R+ A++C  LQG
Sbjct: 79  IDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMIDSVLERIRRMADNCSGLQG 138

Query: 436 F 438
           F
Sbjct: 139 F 139



 Score = 61.7 bits (143), Expect = 8e-11
 Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
 Frame = +2

Query: 41  MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTG------AYHGDSDLQLERINVYYNEA 202
           MRE++ +  GQ G QIG   WE+   EHGI P G        H ++    +    +++E 
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60

Query: 203 SXGKYVPRAILVDLEP 250
             GK+VPR+I VDLEP
Sbjct: 61  GQGKFVPRSIYVDLEP 76



 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 17/39 (43%), Positives = 27/39 (69%)
 Frame = +3

Query: 510 EYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENT 626
           EY  +    +SV P+P+VS +VVEPYN+ L+ H  ++N+
Sbjct: 164 EYGKKSNLQFSVYPAPQVSTSVVEPYNSVLTTHATLDNS 202


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 70.5 bits (165), Expect = 2e-13
 Identities = 29/61 (47%), Positives = 42/61 (68%)
 Frame = +1

Query: 256 MDSVRSGPFGQIFRPDNFVF*QSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQG 435
           +D VR+GP+  +F P+  +  +  A NN+A+GHYT G ELVD V D +R+ A++C  LQG
Sbjct: 75  IDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTDKIRRIADNCSGLQG 134

Query: 436 F 438
           F
Sbjct: 135 F 135



 Score = 67.7 bits (158), Expect = 1e-12
 Identities = 33/72 (45%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
 Frame = +2

Query: 41  MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLE--RINVYYNEASXGK 214
           MREI+ I  GQ G QIG   WE+   EHGI P G  + ++  Q      + +++E   GK
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60

Query: 215 YVPRAILVDLEP 250
           YVPR+I VDLEP
Sbjct: 61  YVPRSIYVDLEP 72



 Score = 39.1 bits (87), Expect = 5e-04
 Identities = 16/37 (43%), Positives = 25/37 (67%)
 Frame = +3

Query: 510 EYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVE 620
           EY  +    +SV P+P+VS +VVEPYN+ L+ H  ++
Sbjct: 160 EYTKKSKLQFSVYPAPQVSTSVVEPYNSVLTTHATLD 196


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 29.5 bits (63), Expect = 0.42
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = -1

Query: 381 IDELSTLRVVSLGPVVAGAGLSEDEVVRTEDLSERSRADRVHVPGSKSTRMARG 220
           ++++S   V+ +G    G G++ D   R  ++    + D      SKST+MA G
Sbjct: 62  VEDISKFDVLIIGGGATGTGVAVDASTRGLNVCLLEKTDFASETSSKSTKMAHG 115


>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
           Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = +2

Query: 80  NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERI 181
           N++G    E+++++  +DPT A   + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166


>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 343 AKGHYTEGAELVDSVLDVVRKEAESCDCLQ 432
           A+GH   G ELV +  D +RK++E+   L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -2

Query: 416 DSASFRTTSKTESTSSAPSV*CPLAQLLPAPDCQKTKLSGRKICPK 279
           ++A+ RTTS T+    +PS       L P P    +  S R+ CPK
Sbjct: 390 NAAADRTTSPTQGQPESPS---KSILLRPPPSIASSPESKRRKCPK 432


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +1

Query: 295  RPDNFVF*QSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDC 426
            RP   +F     G++   G   +  E  D ++ +  +  ESCDC
Sbjct: 955  RPSRLIF-YDNCGDSSGAGLCNKAYEHTDELITMAIERIESCDC 997


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 274 GPFGQIFRPDNFVF*QSGAG-NNWAKGHYTEGAEL 375
           GP+G +F P  F+F  +G    NW+   Y E A L
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,362,002
Number of Sequences: 5004
Number of extensions: 44011
Number of successful extensions: 133
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)