Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0985
         (627 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    25   0.80 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   1.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.4  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   9.8  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 24.6 bits (51), Expect = 0.80
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +1

Query: 376 VDSVLDVVRKEAESCDCLQG 435
           +DS+++++R   ++CD L G
Sbjct: 106 IDSIINIIRVRVDACDRLWG 125


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 106 LPELSSDLVAALTSLDMYDFPHFVLFM 26
           L E + +L  AL+S++   F HFVL M
Sbjct: 870 LVEFALELKKALSSINEQSFNHFVLKM 896


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 262  SPCAGLQVDEDGAGHVLAAGG 200
            SP A  Q+ E G G +   GG
Sbjct: 1695 SPYATFQLSEGGGGSLAGLGG 1715


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 262  SPCAGLQVDEDGAGHVLAAGG 200
            SP A  Q+ E G G +   GG
Sbjct: 1691 SPYATFQLSEGGGGSLAGLGG 1711


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -1

Query: 327 AGLSEDEVVRTEDLSERSRADRVHVPGSKSTRMARG 220
           AGL+E+EVV  + ++E   ++      +   R+  G
Sbjct: 62  AGLTEEEVVLAKTIAECPESENTVQKAALVLRLREG 97


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,746
Number of Sequences: 438
Number of extensions: 3312
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)