Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0982
         (275 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo...    26   1.1  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    25   1.5  
SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces po...    24   4.6  
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy...    23   6.1  
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ...    23   8.0  

>SPAC3C7.07c |||arginine-tRNA protein transferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 178 GIYIHTCIEKFYQMT*NXXXXXXXXXNKW 264
           G YIHTC +  Y+ T +         NKW
Sbjct: 217 GYYIHTCPKMKYKATYSPSYLLNPGTNKW 245


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 25.4 bits (53), Expect = 1.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 131  YKYTYFYNNECDLSSK*IN 75
            Y Y YF N +C++ SK +N
Sbjct: 1589 YAYPYFINFQCEMFSKVLN 1607


>SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 235

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 11/43 (25%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +3

Query: 75  INSF-RR*VAFVIVKICILIGSTTSYSLFWLNHYFRYIYTYLY 200
           IN + R   +F+++  C+++ S   ++LF++N    Y+ T  +
Sbjct: 47  INRYGREDFSFIVLFSCMIVISALLWALFYMNTPKGYVTTITF 89


>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 581

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 25  TPCKVAPFFIIHSFINS 75
           TPCK  P F+  S +N+
Sbjct: 231 TPCKSQPIFLSSSHVNN 247


>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 862

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 185 IYILVLRNFIK*HEIFDYFFNISS 256
           +Y   LRN  K  EI DY   I+S
Sbjct: 414 VYAQYLRNLKKVSEILDYITKIAS 437


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,108,991
Number of Sequences: 5004
Number of extensions: 19726
Number of successful extensions: 42
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 61717020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)