Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0982
         (275 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15508| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.33 
SB_49523| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-37)                 26   4.1  
SB_19015| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.2  
SB_39168| Best HMM Match : Cgr1 (HMM E-Value=0.79)                     25   9.5  
SB_36117| Best HMM Match : Rubredoxin (HMM E-Value=1.8)                25   9.5  
SB_15097| Best HMM Match : p450 (HMM E-Value=0)                        25   9.5  

>SB_15508| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 271

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +3

Query: 81  SFRR*VAFVIVKICILIGSTTSYSLFWLNHYFRYIYTYLY*EILSNDMKSLII 239
           S+R    F ++K      STT+  L  L+ Y   ++ Y Y   + N    L+I
Sbjct: 41  SWRNRAVFTVIKETSFSASTTTLCLLTLDRYLAVVHPYFYKRFMHNTRCLLLI 93


>SB_49523| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-37)
          Length = 366

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = +3

Query: 123 ILIGSTTSYSLFWLNHYFRYIYTYLY*EILSNDMKSLIIFLIF 251
           +  GS  + ++  +N Y+R +    Y ++ +    SLI+FL++
Sbjct: 111 LAFGSLQTITIVAVNRYYRVLKPVRYKKVFTFKSTSLILFLVW 153


>SB_19015| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 357

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +3

Query: 96  VAFVIVKICILIGSTTSYSL--FWLNHYFRYIYTYLY*EILSNDMKSLIIFLIFL 254
           V + I+   +L G+ + ++L    LN Y   +Y   Y   ++    SLI+ LI+L
Sbjct: 93  VCYFILLTGVLFGAASVFNLTAMTLNRYIAVMYPLHYSIYVTPKRSSLILMLIWL 147


>SB_39168| Best HMM Match : Cgr1 (HMM E-Value=0.79)
          Length = 358

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -3

Query: 255 EEILKK*SKISCHLIKFLNTSMYIYTENSDLTKTRSKML 139
           E ILKK  K     ++  N  +   TE+ D+ K++ KM+
Sbjct: 80  ERILKKAEKTHKQRVEKFNEYLDELTEHYDIPKSKEKMM 118


>SB_36117| Best HMM Match : Rubredoxin (HMM E-Value=1.8)
          Length = 996

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 221 HEIFDYFFNISSINGKRW 274
           +E+F YF+++  IN  RW
Sbjct: 575 NEMFPYFYSMDRINYSRW 592


>SB_15097| Best HMM Match : p450 (HMM E-Value=0)
          Length = 1310

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 96   VAFVIVKICILIGSTTSYSLFWLN 167
            +A++ +  CILIG+  +  +F LN
Sbjct: 1028 IAYITIDACILIGNILTLIVFHLN 1051


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,623,336
Number of Sequences: 59808
Number of extensions: 121105
Number of successful extensions: 170
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 16,821,457
effective HSP length: 68
effective length of database: 12,754,513
effective search space used: 293353799
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)