Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0982
(275 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z54306-5|CAD59141.1| 1012|Caenorhabditis elegans Hypothetical pr... 29 0.47
Z54306-4|CAA91091.1| 1014|Caenorhabditis elegans Hypothetical pr... 29 0.47
AY314771-1|AAQ84878.1| 1012|Caenorhabditis elegans latrophilin-l... 29 0.47
AY314770-1|AAQ84877.1| 1014|Caenorhabditis elegans latrophilin-l... 29 0.47
Z68295-1|CAA92587.1| 325|Caenorhabditis elegans Hypothetical pr... 26 3.3
AF016423-8|AAB65319.1| 409|Caenorhabditis elegans Hypothetical ... 26 4.4
Z81139-6|CAH60791.2| 358|Caenorhabditis elegans Hypothetical pr... 25 5.8
Z81135-1|CAB03453.1| 627|Caenorhabditis elegans Hypothetical pr... 25 5.8
AY438643-1|AAR00670.1| 627|Caenorhabditis elegans abnormal DAue... 25 5.8
AC025727-3|AAG23386.1| 228|Caenorhabditis elegans Hypothetical ... 25 7.7
>Z54306-5|CAD59141.1| 1012|Caenorhabditis elegans Hypothetical
protein B0457.1b protein.
Length = 1012
Score = 29.1 bits (62), Expect = 0.47
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = +3
Query: 126 LIGSTTSYSLFWLNHYFRYIYTYLY*EILSNDMKSLIIFL---IFLQ*MESD 272
L+G T + LFW+ + Y++ +SN ++ L IFL +F + M D
Sbjct: 751 LLGVTWIFGLFWVEDSRSIVMAYVF--TISNSLQGLFIFLFHVVFAEKMRKD 800
>Z54306-4|CAA91091.1| 1014|Caenorhabditis elegans Hypothetical
protein B0457.1a protein.
Length = 1014
Score = 29.1 bits (62), Expect = 0.47
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = +3
Query: 126 LIGSTTSYSLFWLNHYFRYIYTYLY*EILSNDMKSLIIFL---IFLQ*MESD 272
L+G T + LFW+ + Y++ +SN ++ L IFL +F + M D
Sbjct: 753 LLGVTWIFGLFWVEDSRSIVMAYVF--TISNSLQGLFIFLFHVVFAEKMRKD 802
>AY314771-1|AAQ84878.1| 1012|Caenorhabditis elegans latrophilin-like
protein LAT-1B protein.
Length = 1012
Score = 29.1 bits (62), Expect = 0.47
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = +3
Query: 126 LIGSTTSYSLFWLNHYFRYIYTYLY*EILSNDMKSLIIFL---IFLQ*MESD 272
L+G T + LFW+ + Y++ +SN ++ L IFL +F + M D
Sbjct: 751 LLGVTWIFGLFWVEDSRSIVMAYVF--TISNSLQGLFIFLFHVVFAEKMRKD 800
>AY314770-1|AAQ84877.1| 1014|Caenorhabditis elegans latrophilin-like
protein LAT-1A protein.
Length = 1014
Score = 29.1 bits (62), Expect = 0.47
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = +3
Query: 126 LIGSTTSYSLFWLNHYFRYIYTYLY*EILSNDMKSLIIFL---IFLQ*MESD 272
L+G T + LFW+ + Y++ +SN ++ L IFL +F + M D
Sbjct: 753 LLGVTWIFGLFWVEDSRSIVMAYVF--TISNSLQGLFIFLFHVVFAEKMRKD 802
>Z68295-1|CAA92587.1| 325|Caenorhabditis elegans Hypothetical
protein C07C7.1 protein.
Length = 325
Score = 26.2 bits (55), Expect = 3.3
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +3
Query: 72 FINSFRR*VAFVIVKICILIGSTTSYSLF 158
F +S +R VA++I+ +C L +TS+ L+
Sbjct: 218 FSDSRQRIVAYIIIFLCFLTPPSTSFVLY 246
>AF016423-8|AAB65319.1| 409|Caenorhabditis elegans Hypothetical
protein F40A3.7 protein.
Length = 409
Score = 25.8 bits (54), Expect = 4.4
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +3
Query: 78 NSFRR*VAFVIVKICILI--GSTTSYSLFWLNHYFRYIYTY 194
NSF +AF + L+ +YS F N YFR+ Y +
Sbjct: 59 NSFLAVLAFADIIFLFLLFPNILANYSFFTFNWYFRWFYLH 99
>Z81139-6|CAH60791.2| 358|Caenorhabditis elegans Hypothetical
protein W05H5.8 protein.
Length = 358
Score = 25.4 bits (53), Expect = 5.8
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +3
Query: 129 IGSTTSYSLFWLNHYF 176
I ++T+YSL+WL YF
Sbjct: 6 IANSTNYSLYWLPIYF 21
>Z81135-1|CAB03453.1| 627|Caenorhabditis elegans Hypothetical
protein W01G7.1 protein.
Length = 627
Score = 25.4 bits (53), Expect = 5.8
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -2
Query: 244 KKIIKDFMSFDKISQYKYVYI 182
KK KD MSF + +YK VYI
Sbjct: 107 KKDKKDQMSFQNLLRYKNVYI 127
>AY438643-1|AAR00670.1| 627|Caenorhabditis elegans abnormal DAuer
Formation DAF-5,a Ski oncogene homolog involved in a
neuronal TGF betapathway (71.0 kD) (daf-5) protein.
Length = 627
Score = 25.4 bits (53), Expect = 5.8
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -2
Query: 244 KKIIKDFMSFDKISQYKYVYI 182
KK KD MSF + +YK VYI
Sbjct: 107 KKDKKDQMSFQNLLRYKNVYI 127
>AC025727-3|AAG23386.1| 228|Caenorhabditis elegans Hypothetical
protein Y73E7A.5 protein.
Length = 228
Score = 25.0 bits (52), Expect = 7.7
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -3
Query: 222 CHLIKFLNTSMYIYTEN 172
CH +KFL YI TE+
Sbjct: 32 CHFLKFLGEGSYITTED 48
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,914,790
Number of Sequences: 27780
Number of extensions: 103278
Number of successful extensions: 217
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 238114316
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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