Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0982
         (275 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    20   4.9  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    20   6.5  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    20   6.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   6.5  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    19   8.6  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 20.2 bits (40), Expect = 4.9
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 160 QNKE*DVVDPI 128
           QN E D+VDP+
Sbjct: 161 QNAEEDIVDPV 171


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 19.8 bits (39), Expect = 6.5
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 194 VCIYIPKIVI 165
           VC+Y PKI I
Sbjct: 753 VCLYSPKIYI 762


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 19.8 bits (39), Expect = 6.5
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 194 VCIYIPKIVI 165
           VC+Y PKI I
Sbjct: 843 VCLYSPKIYI 852


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 19.8 bits (39), Expect = 6.5
 Identities = 5/10 (50%), Positives = 8/10 (80%)
 Frame = -3

Query: 51  EEWRHLTRCY 22
           E+W+ L +CY
Sbjct: 419 EDWKPLDKCY 428


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 19.4 bits (38), Expect = 8.6
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = -1

Query: 125 YTYFYNNEC 99
           Y Y YNN C
Sbjct: 96  YKYNYNNNC 104


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,980
Number of Sequences: 438
Number of extensions: 1428
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5388717
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)