Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0982
         (275 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49130.1 68418.m06081 MATE efflux family protein contains Pfa...    26   3.1  
At5g17860.1 68418.m02093 cation exchanger, putative (CAX7) conta...    25   7.1  
At2g28780.1 68415.m03499 expressed protein                             25   7.1  
At2g28120.1 68415.m03416 nodulin family protein similar to nodul...    25   9.4  
At1g43330.1 68414.m04995 myb family protein-related contains sim...    25   9.4  

>At5g49130.1 68418.m06081 MATE efflux family protein contains Pfam
           profile PF01554: MatE Uncharacterized membrane protein
           family
          Length = 502

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = -3

Query: 228 ISCHLIKFLNTSM---YIYTENSDLTKTRSKMLLI 133
           +S  L  F++ S+   YIY EN++  KT SK L +
Sbjct: 210 VSSFLTNFISLSLLLCYIYLENNNNDKTTSKSLCL 244


>At5g17860.1 68418.m02093 cation exchanger, putative (CAX7) contains
           similarity to SWISS-PROT:Q9HC58 NKX3_HUMAN
           Sodium/potassium/calcium exchanger 3 precursor {Homo
           sapiens}; Ca2+:Cation Antiporter (CaCA) Family member
           PMID:11500563
          Length = 570

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 6/42 (14%)
 Frame = +3

Query: 78  NSFRR*VAFVIVKIC-----ILIGSTTSY-SLFWLNHYFRYI 185
           NSF R V F++V +C     I IG  T + +L +L+ Y  Y+
Sbjct: 205 NSFIRDVVFLLVALCCLGLIIFIGKVTIWVALCYLSIYLLYV 246


>At2g28780.1 68415.m03499 expressed protein
          Length = 796

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +3

Query: 99  AFVIVKICILIGSTTSYSLFWLNHYFRY 182
           AF     C ++GS T Y   W+N +  +
Sbjct: 18  AFRTALACTIVGSATLYGPEWINRHVAF 45


>At2g28120.1 68415.m03416 nodulin family protein similar to
           nodulin-like protein [Arabidopsis thaliana] GI:3329368,
           nodule-specific protein Nlj70 [Lotus japonicus]
           GI:3329366
          Length = 577

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 183 IYTYLY*EILSNDMKSLIIFLIFL 254
           I+T LY  I  +D KSLI+ + +L
Sbjct: 162 IFTQLYFAIYGHDSKSLILLIAWL 185


>At1g43330.1 68414.m04995 myb family protein-related contains
           similarity to myb protein [Gallus gallus]
           gi|63628|emb|CAA32767
          Length = 118

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 179 VYIYILVLRNFIK*HEIFDYFFNIS 253
           VYI++ +L N+ K   I  YFF  S
Sbjct: 82  VYIFLSILFNYNKKSNINSYFFGTS 106


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,382,969
Number of Sequences: 28952
Number of extensions: 87350
Number of successful extensions: 132
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 221603184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)