Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0970
         (468 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    31   0.088
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    27   1.9  
SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch...    25   5.8  
SPAC23H4.10c |thi4||thiamine-phosphate dipyrophosphorylase/hydro...    25   5.8  
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr...    25   7.6  

>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 31.1 bits (67), Expect = 0.088
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -2

Query: 386 HNTKYNQYLKMSTSTCNCNARDRVVYGGNSADSTRE 279
           +++ YN+   M TS+C+C++  +  YGGN A    E
Sbjct: 47  YSSTYNEITNMDTSSCSCSSTPK-SYGGNLAPFDEE 81


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = -2

Query: 389 AHNTKYNQYLKMSTSTCNCNARDRVVYGGNSA 294
           +HN  +N + + S ++ +  +R+ V+  GNS+
Sbjct: 616 SHNEMFNSFHRSSVTSASIKSREAVLSAGNSS 647


>SPBC365.02c |cox10||protoheme IX
           farnesyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 387

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 407 NRVYFKAHNTKYNQYLKMSTSTCNCNA 327
           +R +F   + KYN+   + TST   NA
Sbjct: 35  SRTFFSPTHIKYNRLSTLDTSTSTANA 61


>SPAC23H4.10c |thi4||thiamine-phosphate
           dipyrophosphorylase/hydroxyethylthiazole kinase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -2

Query: 182 TPRETARPLDTTVKSPVFLKSTRGSLHLSK 93
           TPRETA+ L   + +P      R SL   K
Sbjct: 207 TPRETAKELRNLIATPPCFAQARSSLTTPK 236


>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 599

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 298 LLPPYTTRSRALQLQVDVLIFKYWLYL 378
           L PP  T +R L  Q+D L++  + YL
Sbjct: 299 LTPPSLTDTRQLMQQLDQLLYTLFSYL 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,645,783
Number of Sequences: 5004
Number of extensions: 29801
Number of successful extensions: 100
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)