Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0970
         (468 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0430 + 3258438-3259200,3259929-3261454                           27   5.7  
12_02_0961 - 24851687-24851962,24852134-24852405,24852521-248529...    27   10.0 
11_01_0572 + 4565353-4565535,4566856-4567095,4567922-4568086,456...    27   10.0 
08_01_0178 - 1509100-1511214                                           27   10.0 
06_02_0087 - 11580046-11580261,11580495-11580620,11581530-115818...    27   10.0 
01_01_0433 + 3282195-3285185                                           27   10.0 

>01_01_0430 + 3258438-3259200,3259929-3261454
          Length = 762

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +2

Query: 170 SPEAFTIVSSSKASLNSRL*MKNRTSFSSWRAGRTIAPWCCQRC 301
           SP+  T +   K S        + T+F SWRAG     W   RC
Sbjct: 36  SPDQATALLQLKRSFTVNT--ASATAFRSWRAGTDCCHWAGVRC 77


>12_02_0961 -
           24851687-24851962,24852134-24852405,24852521-24852953,
           24853554-24853676,24853681-24853686
          Length = 369

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -1

Query: 252 ENDVLFFIYNREFNDALELDTIV-NASGDRK 163
           END+LFF  N   N +   D ++ +ASG  K
Sbjct: 99  ENDLLFFTCNGRCNGSFSFDVLIFDASGCEK 129


>11_01_0572 +
           4565353-4565535,4566856-4567095,4567922-4568086,
           4568612-4568887
          Length = 287

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +1

Query: 349 VLIFKYWLYLVLWALKYTLLFS 414
           V +F  W+YL+ W  ++TL ++
Sbjct: 62  VFLFLLWVYLLNWVRRFTLTYT 83


>08_01_0178 - 1509100-1511214
          Length = 704

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
 Frame = +1

Query: 136 GDFTVVSNGLAVSRGVHD-RIELQGIVEFAVVDEEQDVVFVLAGWKNHCSLVLSALLPPY 312
           G  T +  GL  +  V D R     +    ++ + QD   V  GW    S   S L+PP 
Sbjct: 304 GGGTNILKGLVEAAKVFDGRRYRNAVASVILLSDGQDTYNVNGGWGASNSKNYSVLVPPS 363

Query: 313 TTRSRALQLQVDVLIF 360
             RS   +L V    F
Sbjct: 364 FKRSGDRRLSVHTFGF 379


>06_02_0087 -
           11580046-11580261,11580495-11580620,11581530-11581875,
           11582433-11582572,11583273-11583677
          Length = 410

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -2

Query: 374 YNQYLKMSTSTCNCNARDRVVYGGNSADSTREQWFFQ 264
           YN  L +S   C CN +D V+    S D     WF+Q
Sbjct: 150 YNGSLSLSVLQCGCNVKDLVI----SLDG-GASWFYQ 181


>01_01_0433 + 3282195-3285185
          Length = 996

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 242 TSFSSWRAGRTIAPWCCQRC 301
           T+F SWRAG     W   RC
Sbjct: 54  TAFRSWRAGTDCCRWAGVRC 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,658,792
Number of Sequences: 37544
Number of extensions: 190239
Number of successful extensions: 643
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)