Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0970
         (468 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8264| Best HMM Match : 7tm_1 (HMM E-Value=4.5e-06)                  28   3.4  
SB_9107| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.4  
SB_16098| Best HMM Match : Abhydrolase_1 (HMM E-Value=4.5e-22)         27   7.7  

>SB_8264| Best HMM Match : 7tm_1 (HMM E-Value=4.5e-06)
          Length = 309

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 16/27 (59%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -3

Query: 229 LQPRIQRCLGA-RYDRERLGRPQGRWT 152
           LQPRI RC GA RYD  +  R  GR T
Sbjct: 210 LQPRISRCPGARRYDMHK-ARESGRET 235


>SB_9107| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -3

Query: 217 IQRCLGARYDRERLGRPQGRW 155
           IQR L +  DR+ LGR Q RW
Sbjct: 22  IQRFLSSTNDRDLLGRQQSRW 42


>SB_16098| Best HMM Match : Abhydrolase_1 (HMM E-Value=4.5e-22)
          Length = 863

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = -1

Query: 441 RQLEVHYLVGEQQSVLQGPQH*VQPVLEDEYVDLQLQR 328
           RQ+ + ++VG +  V     + ++ + ED +VD+Q+ R
Sbjct: 786 RQVPISFIVGARSWVNNESSYEIKRIREDSFVDIQVIR 823


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,405,585
Number of Sequences: 59808
Number of extensions: 221860
Number of successful extensions: 827
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 969807871
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)