Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0970
         (468 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF078783-5|AAC26922.1|  236|Caenorhabditis elegans Hypothetical ...    29   1.3  
AL033514-30|CAA22091.1|  313|Caenorhabditis elegans Hypothetical...    27   5.1  
AC024751-7|AAK21507.2| 1258|Caenorhabditis elegans Hypothetical ...    27   5.1  
Z72504-5|CAA96602.2|  812|Caenorhabditis elegans Hypothetical pr...    27   8.9  
U88167-10|AAB42222.1|  804|Caenorhabditis elegans Hypothetical p...    27   8.9  
U88167-9|AAK68288.1|  890|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>AF078783-5|AAC26922.1|  236|Caenorhabditis elegans Hypothetical
           protein H10E21.4 protein.
          Length = 236

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 20/52 (38%), Positives = 28/52 (53%)
 Frame = +1

Query: 184 HDRIELQGIVEFAVVDEEQDVVFVLAGWKNHCSLVLSALLPPYTTRSRALQL 339
           +DRI + GI+  A  D  +D     A +KNH S    +L P    R++ALQL
Sbjct: 114 NDRI-IDGILSIA--DTNRDGQLTYAEFKNHLSSGAKSLSPAEEQRNQALQL 162


>AL033514-30|CAA22091.1|  313|Caenorhabditis elegans Hypothetical
           protein Y75B8A.31 protein.
          Length = 313

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -1

Query: 279 AMVLPARQDENDVLFFIY-NREFNDALELDTIVNASG 172
           A+ LP + DE++ L FI+ ++ F  A  L  +++ SG
Sbjct: 59  ALKLPGKTDEDEDLSFIFVSKNFKKAANLLVLIHGSG 95


>AC024751-7|AAK21507.2| 1258|Caenorhabditis elegans Hypothetical
           protein Y18H1A.3 protein.
          Length = 1258

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 28/99 (28%), Positives = 40/99 (40%)
 Frame = +1

Query: 109 EPRVDFRKTGDFTVVSNGLAVSRGVHDRIELQGIVEFAVVDEEQDVVFVLAGWKNHCSLV 288
           +PR D  +TGD    SN +A     HD  ++      AV     D +  L  W+   SLV
Sbjct: 514 DPRNDSSETGDSMSSSNTIAEDNVFHDTDDITN----AVTSWSGDKLAWLQTWRRVISLV 569

Query: 289 LSALLPPYTTRSRALQLQVDVLIFKYWLYLVLWALKYTL 405
                 PYT  S  + +    L  +  L + L  L + L
Sbjct: 570 -----DPYTNSSAHVAIDCMSLTIENLLLVNLHPLAHWL 603


>Z72504-5|CAA96602.2|  812|Caenorhabditis elegans Hypothetical
           protein C29E6.1a protein.
          Length = 812

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 182 TPRETARPLDTTVKSPVFLKST 117
           TP+ + +P  TT KSPV + +T
Sbjct: 399 TPKPSQKPTTTTTKSPVVITTT 420


>U88167-10|AAB42222.1|  804|Caenorhabditis elegans Hypothetical
           protein D2092.1a protein.
          Length = 804

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 21/79 (26%), Positives = 37/79 (46%)
 Frame = +1

Query: 232 EEQDVVFVLAGWKNHCSLVLSALLPPYTTRSRALQLQVDVLIFKYWLYLVLWALKYTLLF 411
           E ++VV VLA +KN    +LS     + ++ ++L   V  ++F Y+  +    L    LF
Sbjct: 599 ELKEVVNVLASYKNQMEYLLS-----WHSKPKSLTAYVIFMLFVYYFQIYFIPLMILALF 653

Query: 412 SHKVMNFQLTSSVCLSTPS 468
            +  +    TS     +PS
Sbjct: 654 GYNFI-LSKTSGDISDSPS 671


>U88167-9|AAK68288.1|  890|Caenorhabditis elegans Hypothetical
           protein D2092.1b protein.
          Length = 890

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 21/79 (26%), Positives = 37/79 (46%)
 Frame = +1

Query: 232 EEQDVVFVLAGWKNHCSLVLSALLPPYTTRSRALQLQVDVLIFKYWLYLVLWALKYTLLF 411
           E ++VV VLA +KN    +LS     + ++ ++L   V  ++F Y+  +    L    LF
Sbjct: 685 ELKEVVNVLASYKNQMEYLLS-----WHSKPKSLTAYVIFMLFVYYFQIYFIPLMILALF 739

Query: 412 SHKVMNFQLTSSVCLSTPS 468
            +  +    TS     +PS
Sbjct: 740 GYNFI-LSKTSGDISDSPS 757


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,158,372
Number of Sequences: 27780
Number of extensions: 165915
Number of successful extensions: 514
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)