Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0970
         (468 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   2.9  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   2.9  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   3.8  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   6.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.6  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   6.6  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   6.6  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   8.7  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 85  SGRLERCNEPRVDFRK 132
           SG+LER  E R+  RK
Sbjct: 554 SGKLERTEEQRIALRK 569


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 85  SGRLERCNEPRVDFRK 132
           SG+LER  E R+  RK
Sbjct: 592 SGKLERTEEQRIALRK 607


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 372 QPVLEDEYVDLQLQRSG 322
           +PV+ +E VD  L++SG
Sbjct: 168 KPVVAEETVDYMLEKSG 184


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 100 RCNEPRVDFRKTGDFTVVSNGLAVSRG 180
           +CN+ + D  +TG      +G   SRG
Sbjct: 67  QCNDKKTDIEETGRGKGRGHGKGGSRG 93


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 264 LEEPLLPGAVSAVAAVYNTVPS 329
           ++  L+PG+   VA V+N  P+
Sbjct: 924 IDRVLVPGSQQNVAGVFNLRPA 945



 Score = 21.0 bits (42), Expect = 6.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 467  DGVDKHTELVSWK 429
            D +D+HT  V+WK
Sbjct: 986  DDLDQHTLKVTWK 998


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +1

Query: 340 QVDVLIFKYWLYLVLWAL 393
           QV + I   W Y + WAL
Sbjct: 161 QVILFIVLIWTYTIPWAL 178


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 12/45 (26%), Positives = 18/45 (40%)
 Frame = +1

Query: 76  SSASGRLERCNEPRVDFRKTGDFTVVSNGLAVSRGVHDRIELQGI 210
           S  +  L   N P     K GD+T +   +  + G    I+L  I
Sbjct: 10  SYCTWELNATNSPHTCRTKNGDYTKIMPDILTAIGQTPLIKLNNI 54


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +2

Query: 233 KNRTSFSSWRAGRTIAPW 286
           KN  + + W  G+T  PW
Sbjct: 339 KNVEALAKWANGQTGFPW 356


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,710
Number of Sequences: 438
Number of extensions: 2439
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12559158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)