Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0970
         (468 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g20020.1 68416.m02533 protein arginine N-methyltransferase fa...    31   0.51 
At3g03405.1 68416.m00338 hypothetical protein temporary automate...    28   2.7  
At4g16050.1 68417.m02435 expressed protein                             27   6.3  
At1g31010.1 68414.m03797 expressed protein contains Pfam PF05329...    27   6.3  
At4g09520.1 68417.m01565 2,3-biphosphoglycerate-independent phos...    27   8.4  
At3g53330.1 68416.m05884 plastocyanin-like domain-containing pro...    27   8.4  

>At3g20020.1 68416.m02533 protein arginine N-methyltransferase
           family protein similar to SP|Q96LA8 Protein arginine
           N-methyltransferase 6 (EC 2.1.1.-) {Homo sapiens}
          Length = 435

 Score = 30.7 bits (66), Expect = 0.51
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +1

Query: 139 DFTVVSNGLAVSRGVHDR-IELQGIVEFAVVDEEQDVVFVLAGWKNHCSLVLSALLPPYT 315
           D  V +  +  + G+ D+ I L G VE   +DEE DV  +++ W  +  L  S L    T
Sbjct: 151 DIAVQAKEVVKANGLSDKVIVLHGRVEDVEIDEEVDV--IISEWMGYMLLYESMLGSVIT 208

Query: 316 TRSRALQ 336
            R R L+
Sbjct: 209 ARDRWLK 215


>At3g03405.1 68416.m00338 hypothetical protein temporary automated
           functional assignment
          Length = 193

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +1

Query: 196 ELQGIVEFAVVDEEQDVVFVLAGWKNHCSLVL 291
           E+  ++E  ++DEE+ VV V  G+K+  S +L
Sbjct: 103 EVSLVLESFIIDEEKKVVMVSEGFKHRISYIL 134


>At4g16050.1 68417.m02435 expressed protein
          Length = 666

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 222 REFNDALELDTIVNASGDRKAVGHDGEVSGLPE 124
           +  N   + D I N  G+R  +  D  VSGLP+
Sbjct: 549 QRINSRKKSDDIENTEGERSRLVADNNVSGLPQ 581


>At1g31010.1 68414.m03797 expressed protein contains Pfam PF05329:
           Protein of unknown function (DUF731)
          Length = 360

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 356 MSTSTCNCNARDRVVYGGNSADSTREQW 273
           +STS+   ++R R   GGN A+ + E+W
Sbjct: 32  LSTSSTESSSRTRGGGGGNRAEKSSEEW 59


>At4g09520.1 68417.m01565 2,3-biphosphoglycerate-independent
           phosphoglycerate mutase family protein /
           phosphoglyceromutase family protein contains similarity
           to 2,3-bisphosphoglycerate-independent phosphoglycerate
           mutase 1 (EC 5.4.2.1) (Phosphoglyceromutase 1)
           (BPG-independent PGAM 1) (aPGAM 1) (aPGAM-Mj1).
           (Swiss-Prot:Q59007) [Methanococcus jannaschii]; contains
           weak hit to Pfam profile PF01676: Metalloenzyme
           superfamily
          Length = 492

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +1

Query: 109 EPRVDFRKTGDFTVVSNGLAVSRGVHDRIELQGIVEFAVVDEEQDVV 249
           +PRV +R  G F  +  GLA+S G     ++     FA +DE+  VV
Sbjct: 72  DPRVYYRGRGAFESMGAGLAMSPG-----DIAFKSNFATLDEDSGVV 113


>At3g53330.1 68416.m05884 plastocyanin-like domain-containing
           protein similar to mavicyanin SP:P80728 from [Cucurbita
           pepo]
          Length = 310

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 246 DVLFFIYNREFNDALEL 196
           D LFF YN+E ND  E+
Sbjct: 217 DTLFFQYNKELNDVREI 233


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,548,848
Number of Sequences: 28952
Number of extensions: 152640
Number of successful extensions: 469
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 791932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)