Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0953
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    27   2.5  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    26   5.8  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    26   5.8  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    25   7.7  
SPBC409.06 |uch2||ubiquitin C-terminal hydrolase Uch2|Schizosacc...    25   7.7  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    25   7.7  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   7.7  

>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 273 PLSLRCPGTVCLPWKRHCHNSPSRTGTFLSRSTERSHHSP 392
           P++L C GTVC    R+ ++S S      SR    +H  P
Sbjct: 29  PVTLPCGGTVCRKCFRNAYSSESSGKVSPSRCCFYNHKKP 68


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -2

Query: 149 DLFGSILADIKAKLESLAVTLVLNERRV*AIPVTGLSKLSAVTVL*RC 6
           D  G I+ + K K  +  V   LN+ R+  +  TG + L+++ V  RC
Sbjct: 843 DFCGFIVFENKLKSTTATVIRELNDARIRTVMCTGDNVLTSICVGKRC 890


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 303 CLPWKRHCHNSPSRTGTFLSRSTERSHH 386
           CL W RH  +S SR+G         ++H
Sbjct: 268 CLSWNRHVLSSGSRSGAIHHHDVRIANH 295


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 57  DSLNSPLIQDEGDGKTLKLRFDVSQYTPEEIVVKTVDNK 173
           +S+ SP +  EG   +LK R   +  TP+  +  T+D K
Sbjct: 554 NSITSPGVLPEGMAASLKKRTTNTAATPQAALPTTLDTK 592


>SPBC409.06 |uch2||ubiquitin C-terminal hydrolase
           Uch2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 318 RHCHNSPSRTGTFLSRSTERSHHSPRVH*GSRYSITVNNLF 440
           R CHNS +R+  F+S     +     V+    Y+  +NN+F
Sbjct: 131 RCCHNSFARSDPFISEEVRAATDEDEVYHFIAYT-NINNVF 170


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = -3

Query: 397 TRGE**DRSVLLDRNVP-VRDGELWQWRFHGKHTVPG-QRRLNGLRICSLGNKNSLLYSL 224
           T+GE  D    +DR +P  R G+L   +   +    G Q   +G    +   +  ++YSL
Sbjct: 640 TQGEESDLEDRIDRTLPGARRGDLSARKTRPEIICHGVQFSPSGGAFAAATTEGLMIYSL 699

Query: 223 YTDFVSD 203
           Y DF+ D
Sbjct: 700 YNDFLFD 706


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -3

Query: 244 NSLLYSLYTDFVSDFSSCLAWTSNLLSTVLTTISSGV 134
           +S++ S  T  +S  SS    +S+  S+ +TTISSG+
Sbjct: 528 SSIISSPMTSVLSSSSSIPTSSSSDFSSSITTISSGI 564


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,646,423
Number of Sequences: 5004
Number of extensions: 55590
Number of successful extensions: 164
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)