Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0953
(684 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0209 - 26389902-26389928,26389981-26390161,26390265-263904... 32 0.37
05_06_0235 - 26609049-26609468,26610068-26610343,26611579-266117... 31 0.64
07_03_1498 + 26995209-26995752,26995945-26996513 31 0.85
03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015 30 1.5
04_04_0772 + 27970494-27972875 29 2.6
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 29 4.5
08_01_0380 - 3376475-3377116,3377722-3377919,3378381-3378556,337... 28 6.0
04_04_0481 - 25541355-25541849,25541933-25542535,25542730-255428... 28 6.0
03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-69... 28 6.0
05_07_0270 + 28844330-28844727,28844847-28844969,28845082-28845490 28 7.9
01_05_0755 - 24941711-24942167,24942591-24942719,24942840-24943264 28 7.9
>05_06_0209 -
26389902-26389928,26389981-26390161,26390265-26390407,
26390480-26390588,26390839-26391023,26391428-26392082,
26392392-26392496,26392757-26392844,26392885-26392947,
26393451-26393513,26394328-26394484
Length = 591
Score = 32.3 bits (70), Expect = 0.37
Identities = 21/73 (28%), Positives = 31/73 (42%)
Frame = -1
Query: 384 DETAQCFWIGMFLSVMASCGNGASTVSTPSRDSEDLMASGFVPWATKTPCCILCTQISYQ 205
D AQC L +A+ + STV+ P+ D + S +K PC + IS
Sbjct: 324 DMMAQCLRASTSLKALATPASLKSTVNFPNDDLSHQVNSDNGVIKSKRPCFLRIGSISVS 383
Query: 204 ISPRVWHGPVICC 166
+S H +CC
Sbjct: 384 MSIHQTHFCFVCC 396
>05_06_0235 -
26609049-26609468,26610068-26610343,26611579-26611746,
26611850-26611945
Length = 319
Score = 31.5 bits (68), Expect = 0.64
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = -1
Query: 363 WIGMFLSVMASCGNGASTVSTPSRDSEDLMASGFVPW-ATKTPCCILCTQI 214
W G+ V A+CG+G V + S + ++L G V T+ PCCI+ T +
Sbjct: 82 WCGVDEEVEAACGDG---VVSSSNEMQELWPLGEVDQKGTRFPCCIVWTPL 129
>07_03_1498 + 26995209-26995752,26995945-26996513
Length = 370
Score = 31.1 bits (67), Expect = 0.85
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = +3
Query: 30 RQLAEPSHWDSLNSPLIQDEGDGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSD 209
++L P HW + P + + G G+ RF + TP E D+ + VH+ + SD
Sbjct: 245 KELEAPQHWSEMRCPQLANLGSGRFCIARFFHTWTTPMEPNSFGYDS-IKVHSFSDFDSD 303
Query: 210 TKSV 221
+ S+
Sbjct: 304 SDSI 307
>03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015
Length = 327
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/37 (29%), Positives = 24/37 (64%)
Frame = +3
Query: 93 DGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEK 203
D K +++RFD+ + EE+ V D+ L++ +H+++
Sbjct: 140 DDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKKE 176
>04_04_0772 + 27970494-27972875
Length = 793
Score = 29.5 bits (63), Expect = 2.6
Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 4/127 (3%)
Frame = +3
Query: 24 DSRQLAEPSHWDSLNSPLIQDEGDGK-TLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEE 200
D L+EP + + PL+ D GDG T + T + I+ + + AK
Sbjct: 380 DGESLSEPKDFGAEMRPLVHDVGDGMCTTESVLRAMNVTGKIIICDAGGDVSVAKAKLVL 439
Query: 201 KSDTKS---VYREYNREFLLPREQILRPLSLRCPGTVCLPWKRHCHNSPSRTGTFLSRST 371
+S + + ++PR +L +++ P + K + ++PS T F+ + T
Sbjct: 440 RSGAAGMIVIAPQVYGSVIVPRPHVLP--TVQMPFMIGQKIKAYIRSTPSPTANFIFKGT 497
Query: 372 ERSHHSP 392
SP
Sbjct: 498 VFKAKSP 504
>04_03_0018 -
9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +1
Query: 136 LPKRSLLRLSTTNYWSMPNTRRNLIRNLCTE 228
L ++S L LST++ +S + RRNL+R+ T+
Sbjct: 715 LKRKSFLSLSTSSIFSPLSPRRNLLRSTSTD 745
>08_01_0380 -
3376475-3377116,3377722-3377919,3378381-3378556,
3378681-3379703,3380476-3380593
Length = 718
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +3
Query: 120 DVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLP 254
DVS+ IVV +DNK+L A H S S +R + + +LP
Sbjct: 41 DVSRSMDGSIVVHGLDNKILGDA-HPSSSSATSCFRTQSFDTVLP 84
>04_04_0481 -
25541355-25541849,25541933-25542535,25542730-25542837,
25542925-25543260,25543391-25543461,25543692-25543824
Length = 581
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/60 (31%), Positives = 24/60 (40%)
Frame = +1
Query: 187 PNTRRNLIRNLCTENTTGSFCCPGNKS*GH*VFAVPGRCAYRGSAIATTRHHGQEHSYPE 366
P+ R N + L ++T G FC G +PG C G A T H G Y E
Sbjct: 392 PSARWNCMNCLKAQSTCG-FCAHGGNK------LLPGACLAAGEASRRTCHAGNREFYTE 444
>03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-693320,
693391-693518,693951-694010,694113-694163,694704-694821,
694990-695915,695916-697707,697810-697943,698029-698526
Length = 1774
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = +3
Query: 3 TTSSQHS--DSRQLAEPSHWDSLNSPLIQ-DEGDGKTLKLRFDVSQYTPEEIVVKTVDNK 173
T+SS HS +S PS + P G GK L R+D++Q P + + + V +
Sbjct: 947 TSSSAHSNVESHHDHYPSWSQVQHDPKNSLQAGSGKDLNSRYDIAQKLPSQRITRDVPSP 1006
Query: 174 LLVHAKHEEKS 206
+ + E ++
Sbjct: 1007 VFAWSPSESRT 1017
>05_07_0270 + 28844330-28844727,28844847-28844969,28845082-28845490
Length = 309
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Frame = -3
Query: 352 VPVRDG----ELWQWRFHGKHTVPGQRRLNGLRICS 257
VPV DG +LW WR +G+ + G G CS
Sbjct: 145 VPVADGGVSTDLWAWRKYGQKPIKGSPYPRGYYKCS 180
>01_05_0755 - 24941711-24942167,24942591-24942719,24942840-24943264
Length = 336
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Frame = -3
Query: 352 VPVRDG----ELWQWRFHGKHTVPGQRRLNGLRICS 257
VPV DG +LW WR +G+ + G G CS
Sbjct: 156 VPVADGGVSSDLWAWRKYGQKPIKGSPYPRGYYKCS 191
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,686,821
Number of Sequences: 37544
Number of extensions: 343791
Number of successful extensions: 1077
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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