Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0953
(684 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21424| Best HMM Match : HSP20 (HMM E-Value=0) 48 5e-06
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 5e-06
SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 48 5e-06
SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 48 5e-06
SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26) 46 2e-05
SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29) 46 3e-05
SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26) 44 9e-05
SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05) 43 3e-04
SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12) 36 0.040
SB_20040| Best HMM Match : DUF293 (HMM E-Value=2.9) 32 0.50
SB_2062| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_8761| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_48166| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_36070| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26) 28 8.1
SB_53580| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
>SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)
Length = 424
Score = 48.4 bits (110), Expect = 5e-06
Identities = 27/87 (31%), Positives = 47/87 (54%)
Frame = +3
Query: 81 QDEGDGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLPRE 260
+ +GD K + DV+ + P+ I V+ + N+LLV A HE + + +NR+F+LPRE
Sbjct: 92 ESKGDDK-FSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGHYHAMHFNRQFVLPRE 150
Query: 261 QILRPLSLRCPGTVCLPWKRHCHNSPS 341
+ L+ R L ++ N+P+
Sbjct: 151 VDMDSLTTRLDKEGKLHFEAKKRNAPA 177
Score = 48.4 bits (110), Expect = 5e-06
Identities = 27/87 (31%), Positives = 47/87 (54%)
Frame = +3
Query: 81 QDEGDGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLPRE 260
+ +GD K + DV+ + P+ I V+ + N+LLV A HE + + +NR+F+LPRE
Sbjct: 326 ESKGDDK-FSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGHYHAMHFNRQFVLPRE 384
Query: 261 QILRPLSLRCPGTVCLPWKRHCHNSPS 341
+ L+ R L ++ N+P+
Sbjct: 385 VDMDSLTTRLDKEGKLHFEAKKRNAPA 411
Score = 32.3 bits (70), Expect = 0.38
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +3
Query: 114 RFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLP 254
+ DV +Y PEEI K + + V +H + +E+ R F LP
Sbjct: 11 KLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFELKEFRRTFTLP 57
Score = 32.3 bits (70), Expect = 0.38
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +3
Query: 114 RFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLP 254
+ DV +Y PEEI K + + V +H + +E+ R F LP
Sbjct: 245 KLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFELKEFRRTFTLP 291
>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 760
Score = 48.4 bits (110), Expect = 5e-06
Identities = 27/87 (31%), Positives = 47/87 (54%)
Frame = +3
Query: 81 QDEGDGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLPRE 260
+ +GD K + DV+ + P+ I V+ + N+LLV A HE + + +NR+F+LPRE
Sbjct: 92 ESKGDDK-FSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGHYHAMHFNRQFVLPRE 150
Query: 261 QILRPLSLRCPGTVCLPWKRHCHNSPS 341
+ L+ R L ++ N+P+
Sbjct: 151 VDMDSLTTRLDKEGKLHFEAKKRNAPA 177
Score = 32.3 bits (70), Expect = 0.38
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +3
Query: 114 RFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLP 254
+ DV +Y PEEI K + + V +H + +E+ R F LP
Sbjct: 11 KLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFELKEFRRTFTLP 57
>SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 48.4 bits (110), Expect = 5e-06
Identities = 27/87 (31%), Positives = 47/87 (54%)
Frame = +3
Query: 81 QDEGDGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLPRE 260
+ +GD K + DV+ + P+ I V+ + N+LLV A HE + + +NR+F+LPRE
Sbjct: 92 ESKGDDK-FSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGHYHAMHFNRQFVLPRE 150
Query: 261 QILRPLSLRCPGTVCLPWKRHCHNSPS 341
+ L+ R L ++ N+P+
Sbjct: 151 VDMDSLTTRLDKEGKLHFEAKKRNAPA 177
Score = 32.3 bits (70), Expect = 0.38
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +3
Query: 114 RFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLP 254
+ DV +Y PEEI K + + V +H + +E+ R F LP
Sbjct: 11 KLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFELKEFRRTFALP 57
>SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 48.4 bits (110), Expect = 5e-06
Identities = 27/87 (31%), Positives = 47/87 (54%)
Frame = +3
Query: 81 QDEGDGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLPRE 260
+ +GD K + DV+ + P+ I V+ + N+LLV A HE + + +NR+F+LPRE
Sbjct: 92 ESKGDDK-FSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGHYHAMHFNRQFVLPRE 150
Query: 261 QILRPLSLRCPGTVCLPWKRHCHNSPS 341
+ L+ R L ++ N+P+
Sbjct: 151 VDMDSLTTRLDKEGKLHFEAKKRNAPA 177
Score = 32.3 bits (70), Expect = 0.38
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +3
Query: 114 RFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLP 254
+ DV +Y PEEI K + + V +H + +E+ R F LP
Sbjct: 11 KLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFELKEFRRTFALP 57
>SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)
Length = 695
Score = 46.4 bits (105), Expect = 2e-05
Identities = 26/85 (30%), Positives = 42/85 (49%)
Frame = +3
Query: 87 EGDGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLPREQI 266
E + DV + PE I V+ + N+LLV A HE + + +NR+F+LPRE
Sbjct: 93 ESKDDKFSMAMDVKGFPPEAIKVQVLGNELLVSANHEVEHEGHYHAMHFNRQFILPREVD 152
Query: 267 LRPLSLRCPGTVCLPWKRHCHNSPS 341
+ L+ R L ++ N+P+
Sbjct: 153 MDSLTTRLDKEGKLHFEAKKRNAPA 177
Score = 32.7 bits (71), Expect = 0.28
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +3
Query: 114 RFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLP 254
+ DV +Y PEEI K + + V +H + +E+ R F LP
Sbjct: 12 KLDVREYRPEEISFKVENGVVKVQGRHVNEGPFGFELKEFRRTFTLP 58
>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
Length = 189
Score = 46.0 bits (104), Expect = 3e-05
Identities = 22/59 (37%), Positives = 36/59 (61%)
Frame = +3
Query: 111 LRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLPREQILRPLSLR 287
+ DV+ + PE I V+ + N+LLV+A HE + + +NR+F+LPRE + L+ R
Sbjct: 100 MAIDVAGFPPESIKVQVLGNELLVNANHEVEHEGHYHAMHFNRQFVLPREVDMDSLTTR 158
Score = 34.7 bits (76), Expect = 0.071
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +3
Query: 102 TLKL-RFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLP 254
TL++ + DV +Y PEEI K + + V +H + + +E+ R F LP
Sbjct: 6 TLEIAKLDVKEYRPEEISFKVENGVVKVQGRHVNEGEFGFELKEFRRTFTLP 57
>SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)
Length = 185
Score = 44.4 bits (100), Expect = 9e-05
Identities = 22/56 (39%), Positives = 31/56 (55%)
Frame = +3
Query: 93 DGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLPRE 260
D L DVS + PEE+ VK ++L V A+ E + R++NR F+LPRE
Sbjct: 96 DDTKFTLALDVSDFKPEEVDVKVYGHELSVRARQECEEHGFFTARQFNRHFVLPRE 151
>SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)
Length = 259
Score = 42.7 bits (96), Expect = 3e-04
Identities = 21/56 (37%), Positives = 31/56 (55%)
Frame = +3
Query: 93 DGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLPRE 260
D L DVS + PEE+ VK ++L V A+ E + R++NR F+LP+E
Sbjct: 24 DDTKFTLALDVSDFKPEEVDVKVYGHELSVRARQECEEHGFFTARQFNRHFVLPQE 79
>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
Length = 210
Score = 35.5 bits (78), Expect = 0.040
Identities = 21/70 (30%), Positives = 33/70 (47%)
Frame = +3
Query: 87 EGDGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLPREQI 266
EGD K DV Y PEEI +K ++ + KH+ + + E++R + LP
Sbjct: 36 EGD-KVEIATLDVKNYRPEEISLKVEHGRIKIDGKHKSEGEHGYETSEFHRSYNLPDGVD 94
Query: 267 LRPLSLRCPG 296
+ +S R G
Sbjct: 95 VSTVSSRITG 104
>SB_20040| Best HMM Match : DUF293 (HMM E-Value=2.9)
Length = 646
Score = 31.9 bits (69), Expect = 0.50
Identities = 22/86 (25%), Positives = 39/86 (45%)
Frame = +3
Query: 78 IQDEGDGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLPR 257
IQ G+T ++ S+Y E V +DN+ ++ +K EE K+V E++ +
Sbjct: 57 IQIVSQGETFRVFDGSSRYIGEAEVTTILDNQQILGSKMEESGLNKTVTVEFDCKLKYSC 116
Query: 258 EQILRPLSLRCPGTVCLPWKRHCHNS 335
+ L P ++R G R H +
Sbjct: 117 DISLAPKTMRVSGVAEAHKSRDTHRA 142
>SB_2062| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1136
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -3
Query: 379 DRSVLLDRNVPVRDGELWQWRFHGKHTVPGQRR 281
D S L++ +P++D L RF G VPG++R
Sbjct: 444 DSSQALEKILPLQDKPLATVRFQGSRKVPGKKR 476
>SB_8761| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 221
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -1
Query: 660 PTSNSTSTVKANVTKATLTRRPCPTTQIGIRKNIN*QITTSK 535
P N T T A +TKA+ + P PT ++ I + + ++T ++
Sbjct: 174 PKLNPTLTCHARLTKASDSNDPVPTLELTIESSTSGRVTENR 215
>SB_48166| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +3
Query: 204 SDTKSVYREYNREFLLPREQILRPLSLRCPGTVCLPWKRHCHNSPSRTGTFL 359
SD+ SV RE ++ R + PLS G++C+ + N+ +G+FL
Sbjct: 352 SDSDSVMREDLPYSVVARRVRIHPLSWNAIGSICMRIELFGCNTTKESGSFL 403
>SB_36070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 127
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 620 LKQH*HADRVPQRKLEYAKTLIDKLQRVSMWC 525
LK + ADR+P L+ + ID +VS WC
Sbjct: 29 LKPNQTADRIPYLSLDTSYVAIDMRTQVSEWC 60
>SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)
Length = 2157
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 24 DSRQLAEPSHWDSLNSPLIQDEGDGKTLKLRFDVSQYTPEE 146
DS + E + WD+ + D+GD KT++ D S Y E
Sbjct: 1566 DSHEGKEKNEWDNYDGD--NDDGDSKTIEANKDKSVYHHSE 1604
>SB_53580| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 940
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -1
Query: 414 ICCLSGLVANDETAQCFWIGMFLSVMASCGNGASTVSTPS 295
+ L+ +AN+ T + WIG F +V S G +S P+
Sbjct: 61 LATLTASIANNSTRKKLWIGAFFTVDISDGGWSSAGVLPA 100
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,925,929
Number of Sequences: 59808
Number of extensions: 416260
Number of successful extensions: 1224
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1224
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -