Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0953
         (684 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       27   0.22 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   0.51 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    24   1.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.6  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   6.3  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   6.3  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   8.3  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   8.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.3  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 15/56 (26%), Positives = 32/56 (57%)
 Frame = +2

Query: 494 NLILVISKFINTTYLLVVICQLMFLRIPICVVGHGLRVNVALVTFAFTVLVEFEVG 661
           +++++IS   NTT L+++ C+    +  I ++   L +   LVTF   +++  E+G
Sbjct: 45  SVLMIISAIGNTTVLILITCRKRVSKSRIHIMLMHLAIADLLVTF---LMMPLEIG 97


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 663 APTSNSTSTVKANVTKATLTRRPCPTTQIGIRKNI 559
           A +S STS   A+ T ATL    CP+  + ++ +I
Sbjct: 834 ATSSTSTSPRPASSTAATLVLSGCPSNMMELQVDI 868


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 678 SRAQLAPTSNSTSTVKANVTKATLTRRP 595
           + +QL PT  ST    + + +   TRRP
Sbjct: 377 THSQLCPTPRSTHLKVSGINRVGSTRRP 404


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 333 SCGNGASTVSTPSRDSEDL 277
           SCG G + ++TP  DS+ +
Sbjct: 369 SCGGGPTILTTPGLDSDGI 387


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 327 HNSPSRTGTFLSRSTERSHHSP 392
           HNSPS TG+    S   +  SP
Sbjct: 59  HNSPSPTGSSPQHSGSSASTSP 80


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 173 FVVDSLNNDLF 141
           F+VD L NDLF
Sbjct: 96  FIVDRLRNDLF 106


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -3

Query: 613 NINTQTVSHNANWNTQKH*LTNYN 542
           +++ +T+ +N N+N   +   NYN
Sbjct: 84  SLSNKTIHNNNNYNNNNYNNYNYN 107


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 12/39 (30%), Positives = 14/39 (35%)
 Frame = +3

Query: 276 LSLRCPGTVCLPWKRHCHNSPSRTGTFLSRSTERSHHSP 392
           L +R P    L W     N    T T+    TE   H P
Sbjct: 346 LMMRRPKKTRLRWMMEIPNVTLPTSTYSGSPTELPKHLP 384


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = -2

Query: 602  ADRVPQRKLEYAKTLIDKLQRVSMW 528
            + +VP  +L +  + +DK +R   W
Sbjct: 1227 SQKVPPNQLTHEASELDKTRRYDFW 1251


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,548
Number of Sequences: 438
Number of extensions: 3634
Number of successful extensions: 17
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)