Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0953
         (684 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15470.1 68417.m02364 expressed protein low similarity to N-m...    31   0.71 
At1g15150.1 68414.m01811 MATE efflux family protein similar to r...    30   1.2  
At1g15160.1 68414.m01812 MATE efflux family protein Strong simil...    30   1.6  
At4g10560.1 68417.m01729 DC1 domain-containing protein contains ...    29   3.8  
At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) simi...    29   3.8  
At5g45270.1 68418.m05556 WRKY family transcription factor contai...    28   5.0  
At4g02880.1 68417.m00388 expressed protein                             28   5.0  
At1g59750.2 68414.m06728 auxin-responsive factor (ARF1) identica...    28   6.6  
At1g59750.1 68414.m06727 auxin-responsive factor (ARF1) identica...    28   6.6  

>At4g15470.1 68417.m02364 expressed protein low similarity to
           N-methyl-D-aspartate receptor-associated protein
           [Drosophila melanogaster] GI:567104; contains Pfam
           profile PF01027: Uncharacterized protein family UPF0005
          Length = 256

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +2

Query: 536 LLVVICQLMFLRI-PICVVGHGLRVNVALVTFAFTVLVEFEVGASCALEE 682
           +L+ +C + F+ I P+ +      VN+ L+   FTV + F VG SCA+ E
Sbjct: 87  ILLFLCIVPFILIWPLHIYHQKHPVNLILLAL-FTVSLSFTVGVSCAMTE 135


>At1g15150.1 68414.m01811 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           Uncharacterized membrane protein family
          Length = 487

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
 Frame = +2

Query: 542 VVICQLMFLRIPICVVGHGLRVNVALVTFAFTVL----VEFEVGASCALE 679
           VVI Q M   I + +VGH  R+++A  +FA +        F +G SCAL+
Sbjct: 45  VVIIQFMIQIISMVMVGHLGRLSLASASFAVSFCNVTGFSFIIGLSCALD 94


>At1g15160.1 68414.m01812 MATE efflux family protein Strong
           similarity to gi|4734005 F3L12.7 hypothetical protein
           from Arabidopsis thaliana BAC gb|AC007178; similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           Uncharacterized membrane protein family
          Length = 487

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
 Frame = +2

Query: 542 VVICQLMFLRIPICVVGHGLRVNVALVTFAFTVL----VEFEVGASCALE 679
           VVI Q M   I + +VGH  R+++A  +FA +        F +G SCAL+
Sbjct: 45  VVITQSMLQIITMVIVGHLGRLSLASASFAISFCNVTGFSFIMGLSCALD 94


>At4g10560.1 68417.m01729 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 703

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 4/80 (5%)
 Frame = +3

Query: 132 YTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLPREQILRPLSL----RCPGT 299
           Y  +E    T+  K L+      K  + S Y E   + L     + RP+      RCP  
Sbjct: 622 YVCDEYCCLTLHIKCLLGWDLYMKHGSSSFYLEKTVDVLSNNHHMTRPICCYCEKRCPYK 681

Query: 300 VCLPWKRHCHNSPSRTGTFL 359
           +CL W    + S     TFL
Sbjct: 682 ICLEWSGSIYCSSDCIFTFL 701


>At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) similar
           to CREB-binding protein GB:AAC51770 GI:2443859 from
           [Homo sapiens]; contains Pfam PF02135: TAZ zinc finger
           profile; contains Pfam PF00569: Zinc finger, ZZ type
           domain; identical to histone acetyltransferase HAC4
           (GI:14794966) {Arabidopsis thaliana}
          Length = 1456

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 91  VTARLSSFALMSASILPKRSLLR-LSTTNYWSMPNTRRNL 207
           VT+  S+   M  + LPKR L   L  TN+ S PN R NL
Sbjct: 315 VTSYHSNLQPMQQTPLPKRQLHHPLWNTNFQSAPNNRDNL 354


>At5g45270.1 68418.m05556 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 114

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 346 VRDGELWQWRFHGKHTVPGQRRLNGLRICS 257
           + +G+LW WR +G+  + G R   G   C+
Sbjct: 31  IDEGDLWTWRKYGQKDILGSRFPRGYYRCA 60


>At4g02880.1 68417.m00388 expressed protein
          Length = 552

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 236 QGV-FVAQGTNPEAIKSSLSRDGVLTVEAPLPQLAITDRNIPIQ 364
           QGV F + G   EA  S+ S D V  +  P   LAIT  + P+Q
Sbjct: 164 QGVEFHSTGNQAEASTSADSEDAVHKLVYPADNLAITQNSHPLQ 207


>At1g59750.2 68414.m06728 auxin-responsive factor (ARF1) identical
           to auxin response factor 1 GI:2245378 from [Arabidopsis
           thaliana]
          Length = 662

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 132 YTPEEIVVKTVDNKLLVHAKHEEKSDTK 215
           YTPEE+   +  NKL V+A+ + K+D +
Sbjct: 619 YTPEEVKKLSPKNKLAVNARMQLKADAE 646


>At1g59750.1 68414.m06727 auxin-responsive factor (ARF1) identical
           to auxin response factor 1 GI:2245378 from [Arabidopsis
           thaliana]
          Length = 665

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 132 YTPEEIVVKTVDNKLLVHAKHEEKSDTK 215
           YTPEE+   +  NKL V+A+ + K+D +
Sbjct: 622 YTPEEVKKLSPKNKLAVNARMQLKADAE 649


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,606,371
Number of Sequences: 28952
Number of extensions: 283235
Number of successful extensions: 856
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)