Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0951
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1610.02c |||mitochondrial ribosomal protein subunit L1|Schiz...    26   4.8  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    26   4.8  
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    26   6.4  
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc...    25   8.4  

>SPAC1610.02c |||mitochondrial ribosomal protein subunit
           L1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 253

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = +3

Query: 603 VIESSVTKTKFRTYYAGSEVVVAGQVDTATRDLESTVEA 719
           +IES++T   +R   AGS  +  G++  + ++L+  +EA
Sbjct: 177 LIESALTAVDYRQNDAGSINLPVGKLGFSDKELQENIEA 215


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
           Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +1

Query: 442 DADPKLLRK-LSLRNNGFARHIYGPQTRRC 528
           D+DPK+    LSL +  F RH+  P   RC
Sbjct: 538 DSDPKIRETVLSLLDERFDRHLAHPDNIRC 567


>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +3

Query: 540 FYRQVSSPLLSHVKFVYAPDQVIESSVTKTKFRTYYA-GSEVVVAGQVDTATRDLESTVE 716
           F  +V SPLL+ V+ + +PD  + +   K+    + +  +++++ G    A +  +  V 
Sbjct: 5   FPPEVLSPLLNLVQGLSSPDNTVRNDAEKSLSSDWISQRADLLLNGLAILAYQSEDPAVR 64

Query: 717 AFC 725
           +FC
Sbjct: 65  SFC 67


>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 585

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +3

Query: 588 YAPDQVIESSVTKTKFRTYYAGSEVV-VAGQVDTATRDLESTVEAF 722
           Y P+  I +   K+K +  + G EV+   G+V+T     E+    F
Sbjct: 16  YPPENFISNEPEKSKDKDNFNGEEVISYVGEVETVPAKEENVFRRF 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,807,403
Number of Sequences: 5004
Number of extensions: 56657
Number of successful extensions: 164
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)