Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0951
         (732 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribo...    30   1.9  
AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribo...    30   1.9  
AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribo...    30   1.9  
U58757-1|AAD47117.2|  620|Caenorhabditis elegans Dicer related h...    29   2.6  
U41538-5|AAG00012.2|  762|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AF000261-11|AAB52931.1|  268|Caenorhabditis elegans Hypothetical...    29   3.4  
AC006790-13|AAF60737.2|  351|Caenorhabditis elegans Serpentine r...    28   5.9  
Z78410-10|CAB01640.2|  337|Caenorhabditis elegans Hypothetical p...    28   7.8  

>AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribose
            metabolism enzyme-5 protein.
          Length = 2238

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +2

Query: 125  KPASKATPENIARAKIIIDRLEAN 196
            +P  + T ENI +AK+++D+LE N
Sbjct: 1907 QPFGRFTKENIEKAKLVLDKLEKN 1930


>AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribose)
            metabolism enzymeprotein 5, isoform a protein.
          Length = 2276

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +2

Query: 125  KPASKATPENIARAKIIIDRLEAN 196
            +P  + T ENI +AK+++D+LE N
Sbjct: 1945 QPFGRFTKENIEKAKLVLDKLEKN 1968


>AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribose)
            metabolism enzymeprotein 5, isoform b protein.
          Length = 2238

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +2

Query: 125  KPASKATPENIARAKIIIDRLEAN 196
            +P  + T ENI +AK+++D+LE N
Sbjct: 1907 QPFGRFTKENIEKAKLVLDKLEKN 1930


>U58757-1|AAD47117.2|  620|Caenorhabditis elegans Dicer related
           helicase protein 2 protein.
          Length = 620

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 21/69 (30%), Positives = 33/69 (47%)
 Frame = +1

Query: 226 YCHRSNQEQIELFANSTSSNKDEILSLEPIIIFLTDGDPTVGEMNPKTIIKNVAEKNYGS 405
           +C RSN   IE+F   T   K  +  +E +I      +PTV    P T  ++   +N+ S
Sbjct: 126 FCERSNDGPIEMF---TKRLKQMMQEVEDLIRTTLKNEPTVKYEIPPTDKEHNRYENWIS 182

Query: 406 DEATIFSLA 432
           ++    SLA
Sbjct: 183 NQRNCVSLA 191


>U41538-5|AAG00012.2|  762|Caenorhabditis elegans Hypothetical
           protein R04E5.2 protein.
          Length = 762

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +1

Query: 223 RYCHRSNQEQIELFANSTSSNKDEILSLEPIIIFLTDGDPTVGEMNPKTIIKNVAEKN 396
           R  + S +   ELF +   S +  +  LE    +L +  P  G MNPK   +N+ ++N
Sbjct: 527 RRTNTSKKSAAELFCSEKKSERLSLHMLEMTEKWLLEKTPLFGNMNPKA-FENLIQRN 583


>AF000261-11|AAB52931.1|  268|Caenorhabditis elegans Hypothetical
           protein F19B10.1 protein.
          Length = 268

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +2

Query: 113 KPTLKPASKATPENIARAKIIIDRLEANGGT 205
           KP ++P+   +PE +A  K + + ++A GG+
Sbjct: 72  KPAVEPSPSCSPETVAVQKFVTEFMQAAGGS 102


>AC006790-13|AAF60737.2|  351|Caenorhabditis elegans Serpentine
           receptor, class z protein5 protein.
          Length = 351

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 106 VTIVVRILSFRWFLIGICYVSHQYIRIE 23
           V I+  +L+F+WFL GI     + +RIE
Sbjct: 314 VKIMQSLLTFKWFLFGIIRALKRKLRIE 341


>Z78410-10|CAB01640.2|  337|Caenorhabditis elegans Hypothetical
           protein C51E3.3 protein.
          Length = 337

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 24/77 (31%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
 Frame = +1

Query: 214 CCARYCHRSNQEQ--IELFANSTSSNKDEILSLEPIIIFLTDGDPTVGEMNPKTII--KN 381
           C A   H S Q    + LF N TS+       L   +I LT G P +  M    +I  K 
Sbjct: 52  CVADAIHISGQFPFCVHLFGNLTSTQAQCFYMLTVPLIGLTSGGPLILSMGIDRLIAVKF 111

Query: 382 VAEKNYGSDEATIFSLA 432
                Y  DE T++  A
Sbjct: 112 PTRYRYIQDEPTLYICA 128


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,832,044
Number of Sequences: 27780
Number of extensions: 328505
Number of successful extensions: 1011
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)