Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0951
         (732 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    28   0.10 
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    27   0.18 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.9  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 27.9 bits (59), Expect = 0.10
 Identities = 26/91 (28%), Positives = 35/91 (38%), Gaps = 1/91 (1%)
 Frame = +1

Query: 325 LTDGDPTVGEMNPKTIIKNVAEKNYGSDEATIFSLAFG-EDADPKLLRKLSLRNNGFARH 501
           LT G        PK+      +K    D   I+ +A   EDA  K  R +S  +  F   
Sbjct: 411 LTSGKCEHRPFEPKS---TAVQKYQDQDYQPIYFVADSFEDAKEKFRRWVSTMSRPFEVR 467

Query: 502 IYGPQTRRCSCATSTDRSPRLCCHMSNLSTH 594
            Y P T+R     S DR   L   ++   TH
Sbjct: 468 -YDPYTQRVEILDSVDRLDNLMAQVNTEMTH 497


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 27.1 bits (57), Expect = 0.18
 Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
 Frame = -1

Query: 294 FIFVGRC*IGKKLYLFLI-RSMAVPSAASMLVPPFASSLSMMILARAIFSGVAFDAGFSV 118
           F F+     G  +++F   +S+  PS  +M V   A     M++   IF   +F+ GF++
Sbjct: 58  FTFLALLGNGLVIWIFCAAKSLRTPS--NMFVVNLAICDFFMMIKTPIFIYNSFNTGFAL 115

Query: 117 GFTS*RS*YEYFRFGGSLSASAMSVTNTSESKDR 16
           G        + F   GSL+    ++TN + + DR
Sbjct: 116 GNLG----CQIFAVIGSLTGIGAAITNAAIAYDR 145


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -2

Query: 497 RAKPLLRSDNLRRSLGSASSPKASENIVASSLP 399
           R   ++   ++ + + S   PK+SE+   SS+P
Sbjct: 336 RLTAMMHHLHVAKQMASPEPPKSSESSTGSSIP 368


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,055
Number of Sequences: 438
Number of extensions: 3761
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)