Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0951
         (732 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g78910.1 68414.m09199 pseudouridine synthase family protein l...    32   0.45 
At1g45100.1 68414.m05170 polyadenylate-binding protein, putative...    30   1.4  
At2g28470.1 68415.m03460 beta-galactosidase, putative / lactase,...    29   2.4  
At5g51560.1 68418.m06393 leucine-rich repeat transmembrane prote...    29   3.2  
At2g35940.2 68415.m04412 homeodomain-containing protein contains...    29   3.2  
At2g35940.1 68415.m04411 homeodomain-containing protein contains...    29   3.2  
At2g34150.1 68415.m04180 expressed protein                             29   3.2  
At1g72640.1 68414.m08399 expressed protein                             29   3.2  
At1g29170.1 68414.m03569 expressed protein ; expression supporte...    29   3.2  
At5g08380.1 68418.m00987 alpha-galactosidase, putative / melibia...    29   4.2  
At3g53830.1 68416.m05947 regulator of chromosome condensation (R...    28   7.3  

>At1g78910.1 68414.m09199 pseudouridine synthase family protein low
           similarity to SP|P23851 Ribosomal large subunit
           pseudouridine synthase C (EC 4.2.1.70) (Pseudouridylate
           synthase) (Uracil hydrolyase) {Escherichia coli};
           contains Pfam profile PF00849: RNA pseudouridylate
           synthase
          Length = 478

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 20/69 (28%), Positives = 31/69 (44%)
 Frame = +1

Query: 283 NKDEILSLEPIIIFLTDGDPTVGEMNPKTIIKNVAEKNYGSDEATIFSLAFGEDADPKLL 462
           N DEI  L+ ++ F  D    V    PK  +K     +   D     +L+FG D  P+L+
Sbjct: 170 NADEIAYLQRLVRF-KDSAIIVLNKPPKLPVKGNVPIHNSMDALAAAALSFGNDEGPRLV 228

Query: 463 RKLSLRNNG 489
            +L    +G
Sbjct: 229 HRLDRETSG 237


>At1g45100.1 68414.m05170 polyadenylate-binding protein, putative /
           PABP, putative similar to polyadenylate-binding protein
           (poly(A)-binding protein) from {Arabidopsis thaliana}
           SP|P42731, [Nicotiana tabacum] GI:7673355, [Cucumis
           sativus] GI:7528270; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 497

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -2

Query: 569 QQRRGDLSVEVAQLQRRV*GP*MCRAKPLLRSDNLRRSLGSASSP 435
           Q++ G +SV+VA++     GP    AK L   DNLRR +   + P
Sbjct: 434 QKKTGKISVDVAEIASYPVGPKYNVAKKLWYEDNLRRGMLLRTKP 478


>At2g28470.1 68415.m03460 beta-galactosidase, putative / lactase,
           putative similar to Beta-galactosidase precursor
           SP:P48980 from [Lycopersicon esculentum]
          Length = 852

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +2

Query: 32  DVLVTDIADADKEPPKRKYSYYDRHDVKPTLKPASKA 142
           DV+ T +  +  EP K KY++  R+D+   +K A+KA
Sbjct: 76  DVIETYVFWSGHEPEKNKYNFEGRYDLVKFVKLAAKA 112


>At5g51560.1 68418.m06393 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 680

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 25/102 (24%), Positives = 43/102 (42%)
 Frame = +1

Query: 262 FANSTSSNKDEILSLEPIIIFLTDGDPTVGEMNPKTIIKNVAEKNYGSDEATIFSLAFGE 441
           + N T S   E+ SL  + +     +   G + P ++    A +        +F    G+
Sbjct: 152 YNNLTGSIPRELSSLRKLSVLALQSNKLTGAI-PASLGDLSALERLDLSYNHLFGSVPGK 210

Query: 442 DADPKLLRKLSLRNNGFARHIYGPQTRRCSCATSTDRSPRLC 567
            A P LLR L +RNN    ++  P  +R +   S + +  LC
Sbjct: 211 LASPPLLRVLDIRNNSLTGNV-PPVLKRLNEGFSFENNLGLC 251


>At2g35940.2 68415.m04412 homeodomain-containing protein contains
           'Homeobox' domain signature, Prosite:PS00027
          Length = 680

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 71  PPKRKYSYYDRHDVKPTLKPASKATP 148
           PP+ +YS Y  H V PT + A+  TP
Sbjct: 108 PPRVQYSLYGSHQVDPTHQQAACETP 133


>At2g35940.1 68415.m04411 homeodomain-containing protein contains
           'Homeobox' domain signature, Prosite:PS00027
          Length = 680

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 71  PPKRKYSYYDRHDVKPTLKPASKATP 148
           PP+ +YS Y  H V PT + A+  TP
Sbjct: 108 PPRVQYSLYGSHQVDPTHQQAACETP 133


>At2g34150.1 68415.m04180 expressed protein
          Length = 700

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +3

Query: 555 SSPLLSHVKFVYAPDQVIESSVTKTKFRTYYAGSEV-VVAGQVDTATRDLESTVEAFC 725
           SSP L H+K  +   + + SS  + K    Y  S   +V   + T+  D +S  + FC
Sbjct: 412 SSPPLDHMKISFKSSETLPSSELQLKLPDEYTFSSFQLVPETIATSLPDSDSDKDTFC 469


>At1g72640.1 68414.m08399 expressed protein
          Length = 330

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
 Frame = +1

Query: 262 FANSTSSNKDEILSLEPIIIFLTDGDPTVGEM-NPKTIIKNVAEKNYGSDE-------AT 417
           F  + +  K++ L  E  ++F+TDGD  +G+M   + I+K    K    D+        +
Sbjct: 105 FETNEAEEKEDDLDGEKDVVFVTDGDSDLGQMIILQLIVKGTRVKALVKDKRKALEAFGS 164

Query: 418 IFSLAFGEDADPKLLRK 468
              L  G+ +D + L+K
Sbjct: 165 YVELTTGDASDERFLKK 181


>At1g29170.1 68414.m03569 expressed protein ; expression supported
           by MPSS
          Length = 1016

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
 Frame = +3

Query: 555 SSPLLSHVKFVYAPDQVIESSVTKTKF----RTYYAGSEVVVAGQVDTATRDLESTVEAF 722
           SSP L H+K    P   +++S  K KF     TY   S   +  +  T+  D  S  + F
Sbjct: 732 SSPPLQHMKISLNPADTLQASRLKLKFSDGDNTYNTFSSFQLLPETGTSLPDSYSDDDTF 791

Query: 723 C 725
           C
Sbjct: 792 C 792


>At5g08380.1 68418.m00987 alpha-galactosidase, putative / melibiase,
           putative / alpha-D-galactoside galactohydrolase,
           putative similar to alpha-galactosidase SP:Q42656 from
           [Coffea arabica]; contains Pfam profile PF02065:
           Melibiase
          Length = 410

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -2

Query: 308 SKDRISSLLEDVELAKSSICS*LDLWQYRAQHQ 210
           S+  I++L ED+E+  +SI    DLW+++   Q
Sbjct: 354 SRTSITALWEDIEIPANSIVEARDLWEHQTLKQ 386


>At3g53830.1 68416.m05947 regulator of chromosome condensation
           (RCC1) family protein / UVB-resistance protein-related
           contains Pfam PF00415 : Regulator of chromosome
           condensation (RCC1); similar to UVB-resistance protein
           UVR8 (GIi;10177674) [Arabidopsis thaliana]
          Length = 487

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -1

Query: 633 TWSWSHCFRSPDPVRRQ 583
           TW W  C  S DPV +Q
Sbjct: 128 TWGWKECIPSKDPVGKQ 144


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,962,116
Number of Sequences: 28952
Number of extensions: 308367
Number of successful extensions: 941
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)