Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0950
(533 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|... 118 4e-28
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe... 111 8e-26
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo... 66 3e-12
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc... 58 6e-10
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha... 56 4e-09
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 38 7e-04
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 27 1.8
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom... 26 3.1
SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12 |Schiz... 25 7.1
SPBC16G5.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 7.1
>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 503
Score = 118 bits (285), Expect = 4e-28
Identities = 56/90 (62%), Positives = 65/90 (72%), Gaps = 2/90 (2%)
Frame = +3
Query: 246 QNL--LASLETLDNGKPYKDSYFGDLYASIKNLRYYAGWADKIHGNVLPADGKYFAYTRH 419
QNL LAS+ETLDNGK + GD+ A+ RYY GWADK +G + D K FAYTRH
Sbjct: 100 QNLEYLASIETLDNGKSITLAR-GDVQAAADCFRYYGGWADKDYGQTIETDIKRFAYTRH 158
Query: 420 EPVGVCGQIIPWNFPILMAAWKLGPALATG 509
EP+GVCGQIIPWNFP LM AWK+ PA+A G
Sbjct: 159 EPIGVCGQIIPWNFPFLMCAWKIAPAVACG 188
Score = 52.0 bits (119), Expect = 5e-08
Identities = 26/81 (32%), Positives = 41/81 (50%)
Frame = +1
Query: 13 GLFINNEWVKSSDGKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMD 192
GLFINN+ V S G K +P+ ++I EV F+ +PWR
Sbjct: 24 GLFINNQHVDSVHGGRVKVYSPSTEKLICEVADADEEDVDIAVKVARAAFQTDAPWRKFS 83
Query: 193 ASERGALINKLADLIERDRTY 255
+++RG +++LAD IE++ Y
Sbjct: 84 SAQRGRCLSRLADCIEQNLEY 104
>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 111 bits (266), Expect = 8e-26
Identities = 46/90 (51%), Positives = 63/90 (70%)
Frame = +3
Query: 240 KRQNLLASLETLDNGKPYKDSYFGDLYASIKNLRYYAGWADKIHGNVLPADGKYFAYTRH 419
K + LA++E +D+GKP + GD+ +I LRY AGWADKI+G V+P + AY +
Sbjct: 93 KHADTLAAIEAMDSGKPLVSNARGDVDGTIALLRYCAGWADKIYGQVIPTGPEKLAYAKR 152
Query: 420 EPVGVCGQIIPWNFPILMAAWKLGPALATG 509
P+GVCGQI+PWN+P+ MA WK+ PALA G
Sbjct: 153 TPIGVCGQIVPWNYPLNMAGWKIAPALAAG 182
Score = 44.4 bits (100), Expect = 1e-05
Identities = 27/77 (35%), Positives = 42/77 (54%)
Frame = +1
Query: 13 GLFINNEWVKSSDGKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMD 192
GL+IN EW KS++ T++T +P+ +VIA+V FK W+ +
Sbjct: 22 GLYINGEWHKSAE--TWETVDPSIEEVIAKVYLAGEKEIDYAVKSAKEAFKT---WKKVP 76
Query: 193 ASERGALINKLADLIER 243
SE+G L+ KLA+L E+
Sbjct: 77 GSEKGELLMKLAELTEK 93
>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 500
Score = 66.1 bits (154), Expect = 3e-12
Identities = 36/93 (38%), Positives = 55/93 (59%), Gaps = 3/93 (3%)
Frame = +3
Query: 240 KRQNLLASLETLDNGKPYKDSYFGDLYASIKNLRYYAGWADKIHGNV---LPADGKYFAY 410
+++ LLA ++T++ GKP + F D+ + YYA A+ + V LP + + A+
Sbjct: 99 EKRELLAGIDTINCGKPTPYALF-DIDSCADMFEYYAEVAETDNPTVKVPLPNNPGFCAF 157
Query: 411 TRHEPVGVCGQIIPWNFPILMAAWKLGPALATG 509
+ P GV G I PWNFP+ MA WKL PA+A+G
Sbjct: 158 EKRFPRGVIGVITPWNFPLKMALWKLVPAIASG 190
>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 58.4 bits (135), Expect = 6e-10
Identities = 34/86 (39%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Frame = +3
Query: 255 LASLETLDNGKPYKDSYFGDLYASIKNLRYYAGWADKIHGNV-LPADGKYFAYTRHEPVG 431
LA++ TL+NGK D+ G++ + K + ++AG A +I G+ + ++ + T +PVG
Sbjct: 103 LATMMTLENGKALGDAK-GEVVYAAKFIDWFAGEALRISGDSSMSSNPQNRIITIKQPVG 161
Query: 432 VCGQIIPWNFPILMAAWKLGPALATG 509
V G I PWNFP M K+G ALA G
Sbjct: 162 VVGIITPWNFPAAMITRKVGAALAAG 187
Score = 35.9 bits (79), Expect = 0.004
Identities = 21/73 (28%), Positives = 31/73 (42%)
Frame = +1
Query: 19 FINNEWVKSSDGKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMDAS 198
+I +WV ++ GKTF ENP + +A V F +R D
Sbjct: 27 YIGGKWVTAASGKTFDVENPGLNETLAPVTDMSVEETRKAIKVAHEAF---LSYRNSDIK 83
Query: 199 ERGALINKLADLI 237
ER A++ + DLI
Sbjct: 84 ERYAILRRWYDLI 96
>SPAC139.05 |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 493
Score = 55.6 bits (128), Expect = 4e-09
Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Frame = +3
Query: 255 LASLETLDNGKPYKDSYFGDLYASIKNLRYYAGWADKIHGNVLPAD--GKYFAYTRHEPV 428
L + TL+NGKP + ++ L++YA A + G+V P+ + F + +PV
Sbjct: 97 LVKMLTLENGKPLSQAEM-EVTTCSGYLKWYAAEAVRTFGDVAPSSLQSQNFLISIKQPV 155
Query: 429 GVCGQIIPWNFPILMAAWKLGPALATG 509
GV I PWNFP M A K G ALA G
Sbjct: 156 GVSALITPWNFPAAMIARKGGAALAAG 182
Score = 39.1 bits (87), Expect = 4e-04
Identities = 19/77 (24%), Positives = 36/77 (46%)
Frame = +1
Query: 19 FINNEWVKSSDGKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMDAS 198
F+ +W+ S + KTF+ +NPA G++I +V FK ++
Sbjct: 21 FVQGKWISSPNNKTFEVDNPATGEIIGKVADVSVEETKKAISAANEAFK---TYKNFTHV 77
Query: 199 ERGALINKLADLIERDR 249
+R L+ + A+LI ++
Sbjct: 78 QRSQLLERWAELIMENK 94
>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 38.3 bits (85), Expect = 7e-04
Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Frame = +3
Query: 240 KRQNLLASLETLDNGKPYKDSYFGDLYASIKNLRY-YAGWADKIHGNVLPAD---GKYFA 407
+ Q+ A + D GK D+ FG++ +++ + + A + P
Sbjct: 62 RNQDKYAEIACKDTGKTLVDAAFGEILVTLEKINWTLANGEQSLRPTKRPNSLLTSYKGG 121
Query: 408 YTRHEPVGVCGQIIPWNFPILMAAWKLGPALATG 509
Y ++EP+GV ++ WN+P+ A + AL G
Sbjct: 122 YVKYEPLGVIAALVSWNYPLHNALGPIISALFAG 155
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 27.1 bits (57), Expect = 1.8
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +2
Query: 350 RVGRQDPRECPA-RRRKILCLHSS*ASGCVRSDNTMELPYIDGG 478
+ R+ C A RR+K+ C H S C++ YID G
Sbjct: 14 QTSRRAIHSCLACRRKKLKCDHGRPCSNCLKRSTIQSCIYIDPG 57
>SPBC725.14 |arg6||acetylglutamate synthase Arg6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 500
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -3
Query: 354 TRRSTVGFLLKHTDHRNTSP 295
+RRST GFL KH+ ++ SP
Sbjct: 19 SRRSTKGFLQKHSSLKDGSP 38
>SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 375
Score = 25.0 bits (52), Expect = 7.1
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +2
Query: 116 TKQMWTKL*RQLEMRSNLDHHGEQWTPPRGGPLST 220
T M TKL Q +M+ +D H WTP ST
Sbjct: 24 TSAMDTKL--QTKMKEIIDQHTSTWTPVVSSVTST 56
>SPBC16G5.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 126
Score = 25.0 bits (52), Expect = 7.1
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -3
Query: 348 RSTVGFLLKHTDHRNTSPCMVCRCPAS 268
R F K ++ NT+ +VC CP S
Sbjct: 41 RKYENFFAKENENLNTAARLVCDCPIS 67
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,365,736
Number of Sequences: 5004
Number of extensions: 48840
Number of successful extensions: 128
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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