Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0945
(760 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 33 0.058
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 30 0.41
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 29 0.54
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 29 0.95
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 29 0.95
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.95
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.2
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 27 3.8
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 26 5.1
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 26 5.1
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo... 26 6.7
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 26 6.7
SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces po... 26 6.7
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 25 8.9
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 25 8.9
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 32.7 bits (71), Expect = 0.058
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = -2
Query: 225 TSCTPRRTTKKFASSTFMRRHSSNTSSKV--TSRPSTKKLICTVAKQSTLWATTGRRTPI 52
TS T T+ SST + +S TSS V +S P T + + T + TPI
Sbjct: 2353 TSSTVVNTSTPITSSTALNTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPI 2412
Query: 51 YSKKTSSNSTSV 16
S + STS+
Sbjct: 2413 TSSTVVNTSTSI 2424
Score = 30.3 bits (65), Expect = 0.31
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Frame = -2
Query: 225 TSCTPRRTTKKFASSTFMRRHSSNTSSKV--TSRPSTKKLICTVAKQSTLWATTGRRTPI 52
TS T T+ SS+ + + TSS V TS P T + + T TPI
Sbjct: 2305 TSSTALNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTPI 2364
Query: 51 YSKKTSSNSTSV 16
S + STS+
Sbjct: 2365 TSSTALNTSTSI 2376
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 29.9 bits (64), Expect = 0.41
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +2
Query: 509 CLRCWGKSGNWNSWR 553
C+ CWG++G W W+
Sbjct: 340 CVVCWGRTGGWRLWK 354
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 29.5 bits (63), Expect = 0.54
Identities = 16/51 (31%), Positives = 29/51 (56%)
Frame = -2
Query: 162 SSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIYSKKTSSNSTSVLT 10
S ++++ +TS + +I T + +++ +T TPI S TSSNS + T
Sbjct: 154 SDSSATTITSSSPSTSIIGTGSTDTSVSSTLTYHTPIASPTTSSNSDNEYT 204
Score = 27.1 bits (57), Expect = 2.9
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Frame = -2
Query: 228 TTSCTPRRT--TKKFASSTFMRRHSSNTSSKVTSRPST--KKLICTVAKQSTLWATTGRR 61
+TS P +T + F SST + SS+TSS +S+ ST T+A STL TT
Sbjct: 259 STSSVPTQTIDSSSFTSSTPVSLTSSSTSSSGSSQDSTTIDSTPSTIA-TSTLQPTTS-- 315
Query: 60 TPIYSKKTSSNS 25
+PI + S +S
Sbjct: 316 SPITTSAPSLSS 327
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 28.7 bits (61), Expect = 0.95
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Frame = -2
Query: 228 TTSCTPRRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWAT---TGRRT 58
T + TP + +STF + TS TS ST TVA ST ++ T
Sbjct: 603 TPTSTPLSNSTVAPTSTFTSSGFNTTSGLPTSSASTPLSNSTVAPTSTFTSSGFNTTSGL 662
Query: 57 PIYSKKTSSNSTSVLTRLT 1
P S T S+++S++ T
Sbjct: 663 PTSSASTPSSNSSIVPTST 681
Score = 26.2 bits (55), Expect = 5.1
Identities = 31/108 (28%), Positives = 45/108 (41%), Gaps = 4/108 (3%)
Frame = -2
Query: 333 NGLGKIPEFSWYSPLRTGYLPPFNSF----FIHLPKEAMTTSCTPRRTTKKFASSTFMRR 166
N +P S +PL + P ++F F +++ TP + +STF
Sbjct: 626 NTTSGLPTSSASTPLSNSTVAPTSTFTSSGFNTTSGLPTSSASTPSSNSSIVPTSTFTSS 685
Query: 165 HSSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIYSKKTSSNST 22
+ TS TS ST TVA ST + ++G T TSS ST
Sbjct: 686 GFNTTSGLPTSSASTPLSNSTVAPTST-FTSSGFNT-TSGLPTSSVST 731
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 28.7 bits (61), Expect = 0.95
Identities = 19/56 (33%), Positives = 25/56 (44%)
Frame = -2
Query: 186 SSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIYSKKTSSNSTS 19
SS+ SS++SS +SRPS+ T ST +T S TSS S
Sbjct: 215 SSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFISTVTVTPSSSSSSTSSEVPS 270
Score = 27.1 bits (57), Expect = 2.9
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -2
Query: 162 SSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIYSKKTSSNSTS 19
SS TSS +S PS+ T + S+ +++ + S +SS+S+S
Sbjct: 133 SSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSS 180
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 28.7 bits (61), Expect = 0.95
Identities = 22/71 (30%), Positives = 36/71 (50%)
Frame = -2
Query: 228 TTSCTPRRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIY 49
TT+CT + ++ ++ ++S+ VTS P T CT + S L+ +T +P
Sbjct: 552 TTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVT-TTNCTTS-TSVLYTSTPITSP-- 607
Query: 48 SKKTSSNSTSV 16
TSS+ST V
Sbjct: 608 -NSTSSSSTQV 617
Score = 26.2 bits (55), Expect = 5.1
Identities = 19/71 (26%), Positives = 33/71 (46%)
Frame = -2
Query: 228 TTSCTPRRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIY 49
TT+CT + ++ ++ ++S+ VTS P T CT + +T TP+
Sbjct: 493 TTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVT-TTNCTTSTSVLYTSTPVTSTPL- 550
Query: 48 SKKTSSNSTSV 16
+ + STSV
Sbjct: 551 ATTNCTTSTSV 561
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 27.5 bits (58), Expect = 2.2
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Frame = -2
Query: 243 PKEAMTTSCTPRRTTKKFASSTFMRRHS---SNTSSKVTSRPSTKKLICTVAKQSTLWAT 73
P + +TT T + + R S S +S K S PST K + ++ +
Sbjct: 620 PSKMLTTLRNNSSTFPSLRKNAMIARKSTADSLSSPKRQSVPSTPKASLSPRVHKSMTYS 679
Query: 72 TGRRTPIYSKKTSSNSTSV 16
+P+Y+ K+ +ST V
Sbjct: 680 PSEASPLYANKSPKSSTMV 698
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 480 LNAYYYYFHSHLPFWWNSGKYGAFK 406
LN Y YF +H P K+G+FK
Sbjct: 119 LNKYASYFQAHEPTLQKLAKFGSFK 143
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 26.2 bits (55), Expect = 5.1
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +1
Query: 241 GQMDKKGVERREVASSKRRVPGKLRDFTQSIGKTLHVVTS*QLLVEEEV 387
G + K G+ V S +PG + + +GK H+ TS +++E +
Sbjct: 330 GSLSKAGLAGYSV--SDLNIPGYKQPWELDVGKPYHIATSLDIMLEAPI 376
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 26.2 bits (55), Expect = 5.1
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -2
Query: 249 HLPKEAMTTSCTPRRTTKKFASSTFMRRHSSNTSSKVT-SRPS 124
H P++ + + P T K STF+R HSS+T S + S PS
Sbjct: 390 HRPRKNINFTPLPPSTPSK--PSTFVRPHSSSTDSPPSPSTPS 430
>SPBC13G1.08c |ash2||Ash2-trithorax family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 25.8 bits (54), Expect = 6.7
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = -2
Query: 288 RTGYLPPFNSFFIHLPKEAMTTSCTPRRTTKKFASSTFMRRHSSNTSSKVTSRPSTKK 115
R+GY+ PF +PK+ + + TP ++ K + S+ S S KK
Sbjct: 216 RSGYIFPFQRVGATVPKKRLVETETPPPSSSKLKEDYKDSKREMKRSNTPWSNASIKK 273
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 25.8 bits (54), Expect = 6.7
Identities = 21/53 (39%), Positives = 29/53 (54%)
Frame = -2
Query: 165 HSSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIYSKKTSSNSTSVLTR 7
HSS T+++ TS P+T T A+ + TT R P + TS+ STS TR
Sbjct: 141 HSSTTANRTTSTPTT-----TTARTT---RTTPR--PTATTNTSNQSTSNSTR 183
>SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 193 FLRSSSRCATRSHCFFGQMDKKGVERREVASSKRRVP 303
FL S+ R+H GQ+D + R SSK+ +P
Sbjct: 16 FLHSNDTLTARTHITKGQIDIELTMRTTKKSSKKGIP 52
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 25.4 bits (53), Expect = 8.9
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Frame = -2
Query: 228 TTSCTPRRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWATT--GRRTP 55
T S PR SS M HS+ + + +P+TK+L+ + + W + R+
Sbjct: 670 TISDKPRSEPDAIPSSKSM--HSNKPFEEKSEKPTTKRLVTNPSNVNASWHSNMLKRQED 727
Query: 54 IYSKK--TSSNSTS 19
+ KK T + +TS
Sbjct: 728 LRKKKPLTDNGATS 741
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -3
Query: 461 ISTHTYRSGGTLVNTELSRNVVGKSTSSS 375
IST + GT+ +T ++ +++G TSSS
Sbjct: 116 ISTSSLSYSGTISSTSIAPSMIGTRTSSS 144
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,007,674
Number of Sequences: 5004
Number of extensions: 64295
Number of successful extensions: 254
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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