Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0945
(760 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1023 - 23710825-23710950,23711037-23711120,23711367-237114... 33 0.33
03_01_0249 - 1935355-1935827,1936129-1936330 32 0.57
11_06_0734 - 26774471-26774652,26775008-26775137,26775447-267755... 31 0.75
12_02_0674 - 21745321-21746223,21746229-21747608 29 3.0
11_04_0306 + 16176873-16177124,16178155-16179152,16179204-161793... 29 3.0
10_06_0029 + 9822216-9823124,9825210-9825329,9826188-9826304,982... 29 4.0
06_03_0403 - 20435349-20435358,20435750-20436204,20436744-20438315 29 4.0
02_03_0134 - 15596379-15597689 29 4.0
07_03_0352 + 17089666-17089982,17090326-17090410,17090674-17090913 28 7.0
05_04_0191 + 18927302-18927707,18928747-18928979,18929062-189291... 28 7.0
12_02_1120 - 26228618-26229403 28 9.3
06_03_1404 - 29928792-29929040,29929147-29929551,29930130-299302... 28 9.3
02_02_0467 - 10620976-10621299 28 9.3
01_01_0639 + 4825703-4826155,4826344-4826559,4826683-4827411 28 9.3
>08_02_1023 -
23710825-23710950,23711037-23711120,23711367-23711492,
23711593-23711712,23712046-23712153,23712243-23712395,
23712505-23712600,23712716-23712800,23713278-23714268,
23714870-23714915,23715806-23715964,23716516-23716651,
23716734-23716900,23717366-23717696,23717827-23718062,
23718326-23718514
Length = 1050
Score = 32.7 bits (71), Expect = 0.33
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = -2
Query: 411 FKERRGEIYFFFYQQLLARYYMERLTNGLGKIPEFSW-YSPLRTGYLPPFNSFF--IHLP 241
F G ++ YQ++L Y++ L + K EFS Y P RT Y FN F +HL
Sbjct: 487 FNNDLGLVFVAVYQRMLHLLYVDDLLAAVRK--EFSQIYDPKRTSYDDAFNEVFRQLHLE 544
Query: 240 KEA 232
EA
Sbjct: 545 AEA 547
>03_01_0249 - 1935355-1935827,1936129-1936330
Length = 224
Score = 31.9 bits (69), Expect = 0.57
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = -1
Query: 280 LPPAFQLLFYPFAQRSNDYELHTEKNYEEIRFLDIYEKTFFQYLQQGHFKAFDK 119
L AFQL F PF R+ D + + + ++ LD+YE Q+L + + A D+
Sbjct: 118 LAMAFQLAFAPFMGRATDMAVVEQNEAKLVKVLDVYE----QWLGENQYFAGDE 167
>11_06_0734 -
26774471-26774652,26775008-26775137,26775447-26775596,
26775685-26775918,26775990-26776161,26776285-26776506,
26776604-26776770,26776880-26777018,26777342-26777693,
26778175-26778370
Length = 647
Score = 31.5 bits (68), Expect = 0.75
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -2
Query: 522 QQRRQIAYLTEDVGLNAYYYYFHSHLPFWWNSGKYGAFKERRGEIYFFFYQQLL 361
++ R I + G+ FH LP W +GKYG +K + YF + +L+
Sbjct: 236 ERYRWIIQRVREYGMKVMLTLFHHSLPPW--AGKYGGWKMEKTVTYFMDFVRLV 287
>12_02_0674 - 21745321-21746223,21746229-21747608
Length = 760
Score = 29.5 bits (63), Expect = 3.0
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = -2
Query: 228 TTSCT-PRRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPI 52
+T+CT P T SST S ++SK +S PST L + K T T TP
Sbjct: 574 STTCTSPLSTATGKTSSTPSTSPLSTSTSKTSSTPSTSPLSSSTIKIPTTARTGELSTPT 633
Query: 51 YSKKTSSNSTSVLT 10
T++ + + T
Sbjct: 634 DKIPTTTRAGDLST 647
>11_04_0306 +
16176873-16177124,16178155-16179152,16179204-16179339,
16179448-16179597,16179711-16179891,16181139-16181298,
16182156-16182378
Length = 699
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -2
Query: 165 HSSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIY 49
H TS+ + PSTK L+C+ +Q+ L + R P+Y
Sbjct: 583 HLDTTSTSINLHPSTKLLLCS-QEQAGLKFSLSRACPLY 620
>10_06_0029 +
9822216-9823124,9825210-9825329,9826188-9826304,
9826387-9826476,9826706-9826756
Length = 428
Score = 29.1 bits (62), Expect = 4.0
Identities = 24/72 (33%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Frame = -2
Query: 273 PPFNSFFIHLPKEAMTTSCTPRR-TTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVA 97
PP H P A TPRR T ASS R SS++SS S ++ T A
Sbjct: 16 PPLAPAAAHAPNSAAAACSTPRRGKTSPHASS---RHASSSSSSSSLPSCSAARVAVTPA 72
Query: 96 KQSTLWATTGRR 61
+T A R
Sbjct: 73 PHATATAPVTMR 84
>06_03_0403 - 20435349-20435358,20435750-20436204,20436744-20438315
Length = 678
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = -2
Query: 162 SSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIYSKKTSSNSTSV 16
+S ++S ++RP+T CT A T +P +K+TSS S+SV
Sbjct: 635 ASRSASPTSARPATSSWTCTS-------AATASASPATAKRTSSTSSSV 676
>02_03_0134 - 15596379-15597689
Length = 436
Score = 29.1 bits (62), Expect = 4.0
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Frame = -2
Query: 225 TSCTPRRTTKKFASSTFMRRHSSNTS----SKVTSRPSTKKLICTVAKQSTLWATTG 67
+S P T + SS M R + ++S S ++SRP K+ + AKQ T AT G
Sbjct: 113 SSVWPPALTARNRSSKDMNRTAKSSSAMQKSNLSSRPGVDKMAASSAKQRTQKATPG 169
>07_03_0352 + 17089666-17089982,17090326-17090410,17090674-17090913
Length = 213
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Frame = +1
Query: 199 RSSSRCATRSHCFFGQM-----DKKGVERREVASSKRRVPGKLRDFTQSIG 336
RS ++ R HCFF + K+G E A ++ PGK R T+ IG
Sbjct: 34 RSQAKVWFRRHCFFQSLVRARDQKRGSESNSGAEKEKLTPGKKR--TRRIG 82
>05_04_0191 +
18927302-18927707,18928747-18928979,18929062-18929127,
18929262-18929340,18929935-18930014,18930099-18930122,
18930254-18930375,18930902-18931109,18931960-18932006,
18932914-18932998,18933292-18933355,18933488-18933609
Length = 511
Score = 28.3 bits (60), Expect = 7.0
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = -3
Query: 611 DEKICYNYGIIKENEQFVM 555
DE +C+ YG ++ENE +++
Sbjct: 459 DEVLCWLYGTVRENEDYIL 477
>12_02_1120 - 26228618-26229403
Length = 261
Score = 27.9 bits (59), Expect = 9.3
Identities = 20/77 (25%), Positives = 35/77 (45%)
Frame = -2
Query: 231 MTTSCTPRRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPI 52
+T S RTT R HSS+ + +T P ++ V ++ L T R P
Sbjct: 153 LTASSEAERTTTMARRRRRSRSHSSHHALMMTP-PVVQEKSIVVVREEKLRRTATERPPE 211
Query: 51 YSKKTSSNSTSVLTRLT 1
++ ++ S+S +RL+
Sbjct: 212 PEEEMTTTSSSEYSRLS 228
>06_03_1404 -
29928792-29929040,29929147-29929551,29930130-29930280,
29930363-29930501,29930578-29930743,29930826-29931041,
29931142-29931323,29931412-29931538,29931974-29932112,
29932227-29932353,29932501-29932612,29932704-29932784,
29933330-29933483,29933569-29933689,29934003-29934045,
29934356-29934460
Length = 838
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -1
Query: 241 QRSNDYELHTEKNYEEIRFLDIYEKTFFQYLQQGHFKAF 125
++S E T+KNYE I F D ++ QYL K F
Sbjct: 607 EKSPFLERLTKKNYEVIYFTDPVDEYLMQYLMDYEDKKF 645
>02_02_0467 - 10620976-10621299
Length = 107
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Frame = +1
Query: 199 RSSSRCATRSHCFFGQM-----DKKGVERREVASSKRRVPGKLRDFTQSIGKTLHV 351
RS ++ R HCFF + K+G E A ++ PGK R + +L +
Sbjct: 22 RSQAKVWFRRHCFFQSLVRARDQKRGSESNSGAEKEKLTPGKKRGTRIGLAASLSI 77
>01_01_0639 + 4825703-4826155,4826344-4826559,4826683-4827411
Length = 465
Score = 27.9 bits (59), Expect = 9.3
Identities = 18/58 (31%), Positives = 24/58 (41%)
Frame = +1
Query: 130 P*SDLAGGIGRMSSHKCRGSEFLRSSSRCATRSHCFFGQMDKKGVERREVASSKRRVP 303
P + GG G +S CRG SS RS Q + GV +++RVP
Sbjct: 350 PTKSVCGGGGYGASPNCRGYMSSTQSSEAKVRSQSAPKQRPEPGVAGGTGGGARKRVP 407
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,995,952
Number of Sequences: 37544
Number of extensions: 392346
Number of successful extensions: 1035
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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