Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0945
(760 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.11
SB_11981| Best HMM Match : CH (HMM E-Value=0.00075) 32 0.58
SB_40114| Best HMM Match : Cu-oxidase_3 (HMM E-Value=0) 31 1.0
SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14) 31 1.3
SB_39292| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_36968| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45) 29 4.1
SB_17729| Best HMM Match : TPR_2 (HMM E-Value=0.41) 29 4.1
SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_55752| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_25448| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_14410| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_12397| Best HMM Match : Extensin_2 (HMM E-Value=0.14) 29 4.1
SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_5862| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_33280| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_4670| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_4607| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_32575| Best HMM Match : SNF7 (HMM E-Value=1.1) 28 9.5
>SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2179
Score = 34.3 bits (75), Expect = 0.11
Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Frame = -2
Query: 234 AMTTSCTPRRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWA--TTGRR 61
A TS K SS R++ TSSK T+ + KL T +K +TL+A T+ +
Sbjct: 1716 AKLTSSKSTTYHAKLTSSESATRYAKRTSSKSTTYHA--KL--TSSKSATLYAKLTSSKS 1771
Query: 60 TPIYSKKTSSNSTSVLTRLT 1
Y+K TSS ST+ +LT
Sbjct: 1772 ATRYAKLTSSKSTTYHAKLT 1791
Score = 31.9 bits (69), Expect = 0.58
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Frame = -2
Query: 234 AMTTSCTPRRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWA--TTGRR 61
A TS K SS R++ TSSK ++R + KL T +K +T A T+
Sbjct: 1680 AKLTSSKSATHNTKLTSSKSATRYAKLTSSKSSTRYA--KL--TSSKSTTYHAKLTSSES 1735
Query: 60 TPIYSKKTSSNSTSVLTRLT 1
Y+K+TSS ST+ +LT
Sbjct: 1736 ATRYAKRTSSKSTTYHAKLT 1755
Score = 28.7 bits (61), Expect = 5.4
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Frame = -2
Query: 234 AMTTSCTPRRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWA--TTGRR 61
A TS K SS H+ TSS+ +R + + T +K +T A T+ +
Sbjct: 1704 AKLTSSKSSTRYAKLTSSKSTTYHAKLTSSESATRYAKR----TSSKSTTYHAKLTSSKS 1759
Query: 60 TPIYSKKTSSNSTSVLTRLT 1
+Y+K TSS S + +LT
Sbjct: 1760 ATLYAKLTSSKSATRYAKLT 1779
>SB_11981| Best HMM Match : CH (HMM E-Value=0.00075)
Length = 823
Score = 31.9 bits (69), Expect = 0.58
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = -2
Query: 300 YSPLRTGYLPPFNSFFIHLPKEAMTTSCTPRRTTKKFASSTFMRRHSSNTSSKV 139
YS ++ G PP+ ++ IH+ ++ TS R KK A S R S S +
Sbjct: 732 YSNVQKGTFPPYRTWSIHISEKVRNTSVKSRGNDKK-APSISTRTESEKEKSSI 784
>SB_40114| Best HMM Match : Cu-oxidase_3 (HMM E-Value=0)
Length = 220
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = -2
Query: 555 VRQLFQFPDLPQQRRQIAYLTEDVGLNAYYYYFHSHLPFWWNSGKYGAF 409
V L Q P LP+Q Q ++ E G +++HSH+ G YGAF
Sbjct: 172 VPYLSQCPILPRQSFQYRFVAEPAGT----HWYHSHMDTKKADGLYGAF 216
>SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14)
Length = 1197
Score = 30.7 bits (66), Expect = 1.3
Identities = 22/68 (32%), Positives = 33/68 (48%)
Frame = -2
Query: 240 KEAMTTSCTPRRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRR 61
KE+ + RR K+ S+ M R S ++ +R +KL VA T T GR+
Sbjct: 1127 KESTRSRAENRRRAKEEMSA--MERELEEASEQIKAREQ-EKLNKHVASVRTKIVTPGRK 1183
Query: 60 TPIYSKKT 37
TP+ K+T
Sbjct: 1184 TPVTPKRT 1191
>SB_39292| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 707
Score = 29.1 bits (62), Expect = 4.1
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 2/101 (1%)
Frame = -2
Query: 303 WYSPLRTGYLPPFNSFFIHLPKEAMTTSCTPRRTTKKFASSTFMRRHSSNTSSKVTSRPS 124
W L T Y N+ H +TT+C P TT + T M H+ T K T
Sbjct: 214 WNHTLTTMYNHTLNTMCNH----TLTTTCNPALTTMCNPALTTMCNHTRTTMCKHTLTTM 269
Query: 123 TKKLICTVAK--QSTLWATTGRRTPIYSKKTSSNSTSVLTR 7
+ T+ +T+ T +TP+ T +++ + LTR
Sbjct: 270 CNHTLTTMCNHTMTTMCNYTHYKTPLC--LTINHTATDLTR 308
>SB_36968| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 295
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = -2
Query: 228 TTSCTPRRTTKKFASSTFMRRHSSNTSSKVTSRPSTKK 115
TTS +P R KK SS +R SS++SS R + KK
Sbjct: 65 TTSSSPERNIKK-KSSKAPKRQSSSSSSSSPKRKTKKK 101
>SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45)
Length = 649
Score = 29.1 bits (62), Expect = 4.1
Identities = 27/71 (38%), Positives = 37/71 (52%)
Frame = -2
Query: 228 TTSCTPRRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIY 49
TT T +TTK A++T +S T + TS ST K T++ ST ATT TP
Sbjct: 447 TTEATKSQTTK--ATTTL---STSTTKATTTSSTSTTKATTTLS-TSTTKATT---TPST 497
Query: 48 SKKTSSNSTSV 16
S ++ ST+V
Sbjct: 498 STTKATTSTAV 508
>SB_17729| Best HMM Match : TPR_2 (HMM E-Value=0.41)
Length = 1234
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -3
Query: 650 NKMDYVKMMDGCLD-EKICYNYGIIKENEQFVMYANYSNSLTY 525
NKM +K + D EKI + G+ ++ E +VM ANY SL +
Sbjct: 1057 NKMKAMKALLKSGDTEKIVFFAGVSRQREIYVMAANYLQSLDW 1099
>SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1067
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/72 (26%), Positives = 37/72 (51%)
Frame = -2
Query: 228 TTSCTPRRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIY 49
TTS ++ ++T + TSS V P+T ++ + + S++ T+ TP+
Sbjct: 443 TTSTPSLESSMTSNNTTLTLAEAVATSSPVL--PTTTSVLTSSMEPSSMATTSTTSTPLE 500
Query: 48 SKKTSSNSTSVL 13
S T++++TS L
Sbjct: 501 SSMTTNSTTSTL 512
Score = 28.7 bits (61), Expect = 5.4
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Frame = -2
Query: 228 TTSCTPRRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTP-I 52
+T+ TP ++ S+T + TSS V P+T ++ T + +S++ T+ TP +
Sbjct: 493 STTSTPLESSMTTNSTTSTLAEAVATSSPVL--PTTTSVL-TSSMESSMATTSTTSTPSL 549
Query: 51 YSKKTSSNSTSVL 13
S T++N+TS L
Sbjct: 550 ESSMTTNNTTSTL 562
>SB_55752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 121
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -2
Query: 387 YFFFYQQLLARYYMERLTNGLGKIPEFSWYSPLRTGYLPPF 265
Y +YQQ YY T G +P F+ Y+ Y+PP+
Sbjct: 73 YTQYYQQYYQNYYQGYPTQGAPPMP-FAPYTGYGNNYMPPY 112
>SB_25448| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 538
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = -2
Query: 210 RRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIYS 46
RR +K A S+ M S T++ S P + A + LW T RRT + S
Sbjct: 232 RRRSKALAPSSRMHAAHSMTAAGTASAPGPGEKSDHTALKFALWMTFERRTTVLS 286
>SB_14410| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 710
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = -2
Query: 210 RRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIYS 46
RR +K A S+ M S T++ S P + A + LW T RRT + S
Sbjct: 132 RRRSKALAPSSRMHAAHSMTAAGTASAPGPGEKSDHTALKFALWMTFERRTTVLS 186
>SB_12397| Best HMM Match : Extensin_2 (HMM E-Value=0.14)
Length = 659
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = -2
Query: 231 MTTSCTPRRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLIC-TVAKQSTLWATTGRRTP 55
+TTS P+ ++ F +++ + ++ S + ++P T IC T + Q + G T
Sbjct: 37 LTTSIQPQTSSPIFHTTSTRPQTTTTVGSTILTQPQTSSAICHTTSTQPHTSSAVGHTTS 96
Query: 54 IYSKKTS 34
+K+S
Sbjct: 97 TKPQKSS 103
>SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1277
Score = 28.7 bits (61), Expect = 5.4
Identities = 21/53 (39%), Positives = 27/53 (50%)
Frame = -2
Query: 249 HLPKEAMTTSCTPRRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQ 91
H + + TT RR + AS T R SSNT+ + T RPS K+L T Q
Sbjct: 1123 HTRRSSNTTRGHTRRQVTQLASHT---RRSSNTTRRHTRRPS-KQLAVTQGGQ 1171
>SB_5862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2353
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = -2
Query: 174 MRRHSSNTSSKVTSRPSTKK-LICTVAKQSTLWATTGRRTPIYSKKTSSNSTS 19
+R+ S N S K ++CT+ K T RT SK ++ NSTS
Sbjct: 2196 LRKCSENVSRKAQEHCRVAPYMVCTLTKSCRYQTATRTRTVRLSKASNENSTS 2248
>SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 28.3 bits (60), Expect = 7.2
Identities = 20/70 (28%), Positives = 34/70 (48%)
Frame = -2
Query: 228 TTSCTPRRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIY 49
TTS T +T ++ST ++NTS+ TS P T T A ++ + + R P
Sbjct: 11 TTSITTSTSTP--STSTPRAGSTTNTSAPSTSTPRTGSTTTTSAPSTSTTSNSTTRAPST 68
Query: 48 SKKTSSNSTS 19
S + ++T+
Sbjct: 69 STPRAGSTTT 78
>SB_33280| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 186
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/61 (27%), Positives = 25/61 (40%)
Frame = -2
Query: 237 EAMTTSCTPRRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRT 58
E TT T TT ++T + ++ T P+T I T ++ T TT T
Sbjct: 27 ETTTTKTTEEPTTITETTTTTEEPTTITETTTTTEEPTTITEITTTTEEPTTTTTTAAET 86
Query: 57 P 55
P
Sbjct: 87 P 87
>SB_4670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1012
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/36 (30%), Positives = 24/36 (66%)
Frame = -2
Query: 216 TPRRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLI 109
TPRR T++F+++T + +SNT+ ++ + + + I
Sbjct: 531 TPRRLTQRFSTATTLLAQTSNTTKELGKKYAKSRSI 566
>SB_4607| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 57
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -1
Query: 232 NDYELHTEKNYEEIRFLDIYEK 167
+DYEL T NYE +R ++ YE+
Sbjct: 2 HDYELCTTMNYERLRTMNDYER 23
>SB_32575| Best HMM Match : SNF7 (HMM E-Value=1.1)
Length = 579
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 665 NMEVKNKMDYVKMMDGCLDEKI 600
N+E KN +D VK + GCLD +
Sbjct: 328 NVEFKNALDGVKSVIGCLDRTV 349
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,774,544
Number of Sequences: 59808
Number of extensions: 447064
Number of successful extensions: 1220
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1212
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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