Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0945
(760 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g09000.1 68416.m01053 proline-rich family protein 32 0.36
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 32 0.48
At5g03110.1 68418.m00259 expressed protein various predicted pro... 30 1.5
At4g17620.1 68417.m02636 glycine-rich protein 29 2.5
At2g22680.1 68415.m02688 zinc finger (C3HC4-type RING finger) fa... 29 2.5
At1g80090.1 68414.m09375 CBS domain-containing protein low simil... 29 2.5
At1g72940.1 68414.m08436 disease resistance protein (TIR-NBS cla... 29 3.4
At1g72920.1 68414.m08434 disease resistance protein (TIR-NBS cla... 29 3.4
At1g04730.1 68414.m00469 AAA-type ATPase family protein contains... 29 3.4
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 29 4.4
At1g65130.1 68414.m07384 ubiquitin carboxyl-terminal hydrolase-r... 29 4.4
>At3g09000.1 68416.m01053 proline-rich family protein
Length = 541
Score = 32.3 bits (70), Expect = 0.36
Identities = 21/58 (36%), Positives = 28/58 (48%)
Frame = -2
Query: 174 MRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIYSKKTSSNSTSVLTRLT 1
+RR SS+ SS+ TSRP+T T ST T R + S +S +T R T
Sbjct: 144 LRRPSSSGSSRSTSRPATPTRRSTTPTTSTSRPVTTRASNSRSSTPTSRATLTAARAT 201
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 31.9 bits (69), Expect = 0.48
Identities = 21/79 (26%), Positives = 34/79 (43%)
Frame = -2
Query: 360 ARYYMERLTNGLGKIPEFSWYSPLRTGYLPPFNSFFIHLPKEAMTTSCTPRRTTKKFASS 181
A+ ++ RL NG P S + L GY+PP+N + H P P + F++
Sbjct: 198 AQSHIARLGNGDPTNP--SLFGALPMGYVPPYNGYGYHQPPGTYGYMLPPIQNQAAFSNM 255
Query: 180 TFMRRHSSNTSSKVTSRPS 124
+N + + TS S
Sbjct: 256 IAQPNQGNNNALQGTSPDS 274
>At5g03110.1 68418.m00259 expressed protein various predicted
proteins, Arabidopsis thaliana
Length = 283
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = -2
Query: 279 YLPPFNSFFIHLPKEAMTTSCTPRRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLIC 106
Y PPF F T+ R + AS F+RR+ S ++ V PS+ K+ C
Sbjct: 17 YPPPFMGFLRSKSNGGSTSRSRSRSRGRSRASPLFVRRNKS--AAAVAQEPSSPKVTC 72
>At4g17620.1 68417.m02636 glycine-rich protein
Length = 544
Score = 29.5 bits (63), Expect = 2.5
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = -3
Query: 611 DEKICYNYGIIKENEQFVM 555
DE +C+ YG +KENE +++
Sbjct: 487 DEVLCWLYGTVKENEDYIL 505
>At2g22680.1 68415.m02688 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 683
Score = 29.5 bits (63), Expect = 2.5
Identities = 22/69 (31%), Positives = 31/69 (44%)
Frame = -2
Query: 228 TTSCTPRRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIY 49
+T TPR + S R ++ S +S P T KL C K +T TT R +
Sbjct: 42 STPSTPRSDSGTGTYSLRCRTSTATAVSTTSSLPGTPKLKC---KTTTTGETTPRNRSLV 98
Query: 48 SKKTSSNST 22
S T S+S+
Sbjct: 99 SLLTPSSSS 107
>At1g80090.1 68414.m09375 CBS domain-containing protein low
similarity to SP|Q9MYP4 5'-AMP-activated protein kinase,
gamma-3 subunit (AMPK gamma-3 chain) (AMPK gamma3) {Sus
scrofa}; contains Pfam profile PF00571: CBS domain
Length = 402
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -3
Query: 410 SRNVVGKSTSSSTNNC*LVTTWSVLPMDWVKSL-SFPGTRLFELATS 273
+R VVG ++S C L T S LP++ ++ + P T LF ATS
Sbjct: 292 NRRVVGTFSASDLKGCHLATLRSWLPLNALEFVEKIPRTLLFTAATS 338
>At1g72940.1 68414.m08436 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 371
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = -1
Query: 139 HFKAFDKKIDLHSSKAVNFVG 77
H KA +KK+DL+S+K++ VG
Sbjct: 191 HMKALNKKLDLNSNKSLRVVG 211
>At1g72920.1 68414.m08434 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 275
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = -1
Query: 139 HFKAFDKKIDLHSSKAVNFVG 77
H KA +KK+DL+S+K++ VG
Sbjct: 191 HMKALNKKLDLNSNKSLRVVG 211
>At1g04730.1 68414.m00469 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 954
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -2
Query: 162 SSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIYSKKTS 34
+S S + ++P KK+ +AK++ A +RTP+ SK S
Sbjct: 833 ASGGKSGILNKPEIKKINQDLAKKTNAAANESQRTPVTSKPPS 875
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -2
Query: 360 ARYYMERLTNGLGKIPEFSWYSPLRTGYLPPFNSFFIHLP 241
A+ ++ RL NG P S + L GY+PP+N + H P
Sbjct: 198 AQSHIARLGNGDPTNP--SLFGALPMGYVPPYNGYGYHPP 235
>At1g65130.1 68414.m07384 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1086
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = -1
Query: 679 LNILSTWKLKIKWTTLR*WMVALTRKYVIITELSKKTNNS*C 554
L ++S W+LKI ++R WM+ K++ E+S+ T + C
Sbjct: 331 LLLVSFWELKILSCSIRDWMMQFPVKHLAQFEVSEHTLTTEC 372
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,420,285
Number of Sequences: 28952
Number of extensions: 322115
Number of successful extensions: 939
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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