Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0939
         (736 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07741.1 68415.m00991 ATPase subunit 6, putative similar to A...    32   0.34 
At3g08630.1 68416.m01002 expressed protein                             28   7.4  

>At2g07741.1 68415.m00991 ATPase subunit 6, putative similar to
           ATPase subunit 6 GI:515963 from [Raphanus sativus];
           contains Pfam profile: PF00119 ATP synthase, A subunit
          Length = 385

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
 Frame = +1

Query: 514 TLAVRLTANIIAGHLLITLLRRTG-----TNISFY--XXXXXXXXXXXXXXXESAVAIIQ 672
           +L +RL AN++AGH L+ +L          N  FY                 E  VAI+Q
Sbjct: 307 SLGIRLFANMMAGHSLVKILSGFAWTMLCMNDIFYFIGALGPLFIVLALTGLELGVAILQ 366

Query: 673 SYVITILRTLYYSE 714
           +YV TIL  +Y ++
Sbjct: 367 AYVFTILICIYLND 380


>At3g08630.1 68416.m01002 expressed protein
          Length = 339

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 502 YSTGTLAVRLTANIIAGHLLITLLRRTGT 588
           + T  +A+R+  N++ G   +TL R TG+
Sbjct: 290 FKTSVIALRVVNNVLGGMSFVTLARMTGS 318


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,186,794
Number of Sequences: 28952
Number of extensions: 131917
Number of successful extensions: 238
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)