Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0934
(303 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0894 - 21365629-21365766,21365849-21365950,21366042-213662... 48 1e-06
03_01_0016 + 131141-131236,131743-132043,132125-132341,132440-13... 47 3e-06
06_03_0898 + 25772496-25773501,25774540-25775150 29 0.92
07_03_1457 - 26674128-26674783,26675741-26675962,26676065-26676362 28 1.2
07_01_1203 - 11464142-11464324,11464422-11464484,11464685-114665... 28 1.6
06_01_1076 - 8778210-8778734 26 4.9
11_06_0234 + 21574380-21575197,21576131-21576190,21578320-215800... 26 6.5
06_03_0778 - 24523780-24526353 25 8.6
03_05_0339 + 23287620-23287676,23287784-23287849,23287937-232880... 25 8.6
>10_08_0894 - 21365629-21365766,21365849-21365950,21366042-21366284,
21366685-21366813,21366999-21367103,21367196-21367387,
21367486-21367639,21368148-21368209,21368291-21368437,
21368517-21368564,21369091-21369228,21369305-21369451,
21370579-21370665,21370754-21370861,21370941-21371041,
21371870-21371996,21372820-21372936,21373029-21373106,
21373240-21373284,21373637-21373756,21373838-21373964,
21374033-21374253,21374347-21374529,21374772-21374924,
21375051-21375146,21375226-21375331,21375410-21375492,
21375576-21375728,21375819-21376058,21376367-21376414,
21376782-21376928,21377007-21377115,21377200-21377345,
21377715-21377809,21377944-21378049,21378177-21378368,
21378456-21378686,21378772-21378866,21379426-21379529,
21380040-21380284,21380300-21380347,21380376-21380480,
21380630-21380767,21381458-21381649,21381738-21381914,
21382001-21382129,21382203-21382316,21382407-21382746,
21382836-21383064,21383155-21383455,21384311-21384358,
21387963-21388355
Length = 2493
Score = 48.4 bits (110), Expect = 1e-06
Identities = 21/63 (33%), Positives = 40/63 (63%)
Frame = +1
Query: 67 AIERSIQEWIHPVVDRSIKYALTTCEQIIRKDFALDPDEVRMRTCAHHMMRNLTAGMAMI 246
A++++I+E I PV+ RS+ A T +++I KD+A++ D+ + AH M+ L +A +
Sbjct: 1408 ALDKAIKEIIGPVIQRSVTIASRTTKELILKDYAMEADDSAVSRSAHLMVGTLAGSLAHV 1467
Query: 247 TCR 255
T +
Sbjct: 1468 TSK 1470
>03_01_0016 + 131141-131236,131743-132043,132125-132341,132440-132773,
132883-132996,133065-133193,133293-133469,133555-133746,
134844-134981,135327-135559,135900-136003,136633-136727,
136817-137053,137801-137922,138252-138354,138750-138826,
138909-139017,139107-139253,139953-140000,140292-140492,
140589-140738,140917-141002,141088-141193,141278-141373,
141759-141911,142647-142819,142923-142986,144056-144193,
144548-144595,144690-144836,144907-144968,146540-146645,
147357-147461,147548-147679,147765-147974,148070-148171,
148261-148398
Length = 1729
Score = 46.8 bits (106), Expect = 3e-06
Identities = 18/63 (28%), Positives = 40/63 (63%)
Frame = +1
Query: 67 AIERSIQEWIHPVVDRSIKYALTTCEQIIRKDFALDPDEVRMRTCAHHMMRNLTAGMAMI 246
A++++I+E + PVV++S+ A+ +++I KD+AL+ D +++ H + R + +A
Sbjct: 1142 ALDKAIKEILCPVVEKSVGTAIQNTKKLILKDYALESDNNTIKSSVHSIARTIAGNLAYA 1201
Query: 247 TCR 255
C+
Sbjct: 1202 NCK 1204
>06_03_0898 + 25772496-25773501,25774540-25775150
Length = 538
Score = 28.7 bits (61), Expect = 0.92
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = -3
Query: 283 LVLMVVMICSGM*SLPCRQSSCASCDERRYAFELRQGPMRNPSV*SVHKLS 131
L+++ MIC + CR+ DE A L GP R P V S+H L+
Sbjct: 22 LIIVAAMICGEL----CRRRRRRRGDENGGATRLPPGPWRLPFVGSLHHLA 68
>07_03_1457 - 26674128-26674783,26675741-26675962,26676065-26676362
Length = 391
Score = 28.3 bits (60), Expect = 1.2
Identities = 8/33 (24%), Positives = 18/33 (54%)
Frame = +1
Query: 55 FVKPAIERSIQEWIHPVVDRSIKYALTTCEQII 153
++ P + EW+ P+V R ++Y E+++
Sbjct: 194 YLHPLFQNKTLEWVRPLVPRVVRYIAGAVEELV 226
>07_01_1203 -
11464142-11464324,11464422-11464484,11464685-11466515,
11467240-11468036
Length = 957
Score = 27.9 bits (59), Expect = 1.6
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -1
Query: 171 QCEILPYDLFTSCQSILDRPINDWVNPF 88
+C +P + T ++D+P+ DW N F
Sbjct: 354 KCGGVPLSIITIASLLVDKPLEDWSNVF 381
>06_01_1076 - 8778210-8778734
Length = 174
Score = 26.2 bits (55), Expect = 4.9
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -1
Query: 237 HAGSQVAHHVMSAGTHSNFVRV 172
HAG++V+ +++ G H FVR+
Sbjct: 25 HAGNEVSFSILTHGIHLKFVRL 46
>11_06_0234 +
21574380-21575197,21576131-21576190,21578320-21580053,
21581859-21582006
Length = 919
Score = 25.8 bits (54), Expect = 6.5
Identities = 6/28 (21%), Positives = 16/28 (57%)
Frame = -1
Query: 171 QCEILPYDLFTSCQSILDRPINDWVNPF 88
+C +P + T ++++P+ DW+ +
Sbjct: 381 KCNGMPLSIVTMASLLVNKPVEDWIEVY 408
>06_03_0778 - 24523780-24526353
Length = 857
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +1
Query: 220 NLTAGMAMITCRSRSSPPSALI*RQ 294
N+T G A+I R+RS+PP+A + R+
Sbjct: 439 NVT-GKALIKVRTRSTPPAAAVARR 462
>03_05_0339 +
23287620-23287676,23287784-23287849,23287937-23288048,
23288240-23288368,23288795-23288866,23289245-23289360,
23289494-23289570,23289788-23290273,23290373-23290688,
23290769-23290915
Length = 525
Score = 25.4 bits (53), Expect = 8.6
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +1
Query: 127 ALTTCEQIIRKDFALDPDEVRMRTCAHHMMRNLTAGMAMIT 249
AL II + LD E+ + A H N TAG+ +IT
Sbjct: 435 ALQAIPTIIADNAGLDSAELISQLRAEHHKENCTAGIDVIT 475
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,505,112
Number of Sequences: 37544
Number of extensions: 156178
Number of successful extensions: 349
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 351703996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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