Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0934
         (303 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   0.83 
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   1.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   3.3  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               20   5.8  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    20   5.8  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 0.83
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 198 LRSSHDAQLDCRHGNDHMPEQIITTIST 281
           +    DA L   H + H P    TTI+T
Sbjct: 633 MERERDASLSSTHSHPHEPGAPATTITT 660


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 210 VMSAGTHSNFVRVQCEILPYDLFTS 136
           ++S+G   NFV VQ + L  +LF +
Sbjct: 304 LISSGFFDNFVTVQIQPLKNELFNA 328


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 9/39 (23%), Positives = 17/39 (43%)
 Frame = +1

Query: 97  HPVVDRSIKYALTTCEQIIRKDFALDPDEVRMRTCAHHM 213
           H + DRS   A    + + + +  L  +  R+    HH+
Sbjct: 306 HTLDDRSTAQARVRMQVVSQLEIQLQKERDRLTAMMHHL 344


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.2 bits (40), Expect = 5.8
 Identities = 8/29 (27%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
 Frame = -1

Query: 114 PINDWVNPFLD---RSLDRGLYKLFKMRV 37
           PI+ W++P+L      LD  +Y + + ++
Sbjct: 538 PIHTWIHPWLPLLRNRLDTLIYPIIRRKL 566


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 20.2 bits (40), Expect = 5.8
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -1

Query: 126 ILDRPINDWVNPFLDRSLDRGLYKL 52
           I+ R +   V+P ++ + + GLY L
Sbjct: 28  IMTRKVGSSVSPVVELTENNGLYTL 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,829
Number of Sequences: 438
Number of extensions: 1669
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6368931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)