Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0934
(303 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g02080.1 68414.m00130 transcriptional regulator-related conta... 59 5e-10
At5g52320.1 68418.m06493 cytochrome P450, putative 28 1.0
At2g14680.1 68415.m01651 myosin heavy chain-related contains wea... 28 1.0
At3g47390.1 68416.m05153 cytidine/deoxycytidylate deaminase fami... 27 2.4
At4g33160.1 68417.m04724 F-box family protein (FBX13) contains s... 27 3.2
At5g43030.1 68418.m05250 DC1 domain-containing protein contains ... 26 5.6
At2g33835.1 68415.m04152 zinc finger (CCCH-type) family protein ... 25 7.4
At2g01890.2 68415.m00123 purple acid phosphatase, putative conta... 25 7.4
At2g01890.1 68415.m00122 purple acid phosphatase, putative conta... 25 7.4
At5g36860.1 68418.m04416 Ulp1 protease family protein contains P... 25 9.7
At4g08880.1 68417.m01464 Ulp1 protease family protein contains P... 25 9.7
At4g05280.1 68417.m00799 Ulp1 protease family protein contains P... 25 9.7
At4g03300.1 68417.m00451 Ulp1 protease family protein contains P... 25 9.7
At3g52330.1 68416.m05751 F-box family protein-related contains w... 25 9.7
At3g24390.1 68416.m03063 Ulp1 protease family protein contains P... 25 9.7
At1g34740.1 68414.m04319 Ulp1 protease family protein contains P... 25 9.7
At1g25886.1 68414.m03180 Ulp1 protease family protein contains P... 25 9.7
>At1g02080.1 68414.m00130 transcriptional regulator-related contains
Pfam PF04054: CCR4-Not complex component, Not1; contains
TIGRFAM TIGR01612: reticulocyte binding protein; similar
to General negative regulator of transcription subunit 1
(SP:P25655) {Saccharomyces cerevisiae}; Location of ESTs
gb|T44328 and gb|AA395265
Length = 2378
Score = 59.3 bits (137), Expect = 5e-10
Identities = 27/85 (31%), Positives = 51/85 (60%)
Frame = +1
Query: 1 ICFNPHIILFQNYPHLKQFVKPAIERSIQEWIHPVVDRSIKYALTTCEQIIRKDFALDPD 180
+ N + F + ++ V A++R+I+E + +V RS+ A T ++++ KD+AL+PD
Sbjct: 1275 VVINQKLSAFGMHFPFQRVVPLAMDRAIKEIVSGIVQRSVCIACQTTKELVLKDYALEPD 1334
Query: 181 EVRMRTCAHHMMRNLTAGMAMITCR 255
E R+ AH M+ +L +A +TC+
Sbjct: 1335 ESRIYNAAHLMVASLAGSLAHVTCK 1359
>At5g52320.1 68418.m06493 cytochrome P450, putative
Length = 502
Score = 28.3 bits (60), Expect = 1.0
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +1
Query: 58 VKPAIERSIQEWIHPVVDRSIKYALTTCEQIIRKDFALDPDEVR 189
+KPA SIQ WI +++ ++ L +Q++ K + +E++
Sbjct: 222 LKPAFLWSIQSWIGVGIEKKMRRGLDVFDQMLGKIISAKREEIK 265
>At2g14680.1 68415.m01651 myosin heavy chain-related contains weak
similarity to Swiss-Prot:P35579 myosin heavy chain,
nonmuscle type A (Cellular myosin heavy chain, type A,
Nonmuscle myosin heavy chain-A, NMMHC-A) [Homo sapiens]
Length = 629
Score = 28.3 bits (60), Expect = 1.0
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -1
Query: 168 CEILPYDLFTSCQSILDRPINDW 100
CE L L C S+LD PI W
Sbjct: 198 CESLEMSLHEKCASLLDDPIESW 220
>At3g47390.1 68416.m05153 cytidine/deoxycytidylate deaminase family
protein similar to riboflavin-specific deaminase
[Actinobacillus pleuropneumoniae] GI:1173516; contains
Pfam profile PF00383: Cytidine and deoxycytidylate
deaminase zinc-binding region
Length = 599
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 213 DAQLDCRHGNDHMPEQIITTISTNL 287
D +L RHG H P +I+ T S +L
Sbjct: 240 DPRLTARHGQGHTPTRIVMTQSLDL 264
>At4g33160.1 68417.m04724 F-box family protein (FBX13) contains
similarity to fimbriata GI:547307 from [Antirrhinum
majus]
Length = 417
Score = 26.6 bits (56), Expect = 3.2
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -2
Query: 275 DGGDDLLRHVIIAMPAVKLRIM**AQVRIRTSSGSNAKSFRMICSQV 135
D DD+L V+ +P M + V R S +KSF++ CSQ+
Sbjct: 29 DLNDDVLERVLSWLPTSCFFRM--SSVCKRWKSSQTSKSFKLACSQI 73
>At5g43030.1 68418.m05250 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 564
Score = 25.8 bits (54), Expect = 5.6
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 130 LTTCEQIIRKDFALDPDE 183
L C+Q +RK F LDP++
Sbjct: 98 LPVCKQCVRKPFILDPEK 115
>At2g33835.1 68415.m04152 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 587
Score = 25.4 bits (53), Expect = 7.4
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 153 YDLFTSCQSILDRPIND 103
YD FT +++ DRP+ND
Sbjct: 358 YDPFTDIENLGDRPLND 374
>At2g01890.2 68415.m00123 purple acid phosphatase, putative contains
Pfam profile: PF00149 calcineurin-like phosphoesterase;
identical to purple acid phosphatase (GI:20257479)
[Arabidopsis thaliana];
Length = 307
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = -1
Query: 222 VAHH-VMSAGTHSNFVRVQCEILP 154
V HH + SAG H N + ++ ++LP
Sbjct: 187 VGHHTIKSAGHHGNTIELEKQLLP 210
>At2g01890.1 68415.m00122 purple acid phosphatase, putative contains
Pfam profile: PF00149 calcineurin-like phosphoesterase;
identical to purple acid phosphatase (GI:20257479)
[Arabidopsis thaliana];
Length = 335
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = -1
Query: 222 VAHH-VMSAGTHSNFVRVQCEILP 154
V HH + SAG H N + ++ ++LP
Sbjct: 215 VGHHTIKSAGHHGNTIELEKQLLP 238
>At5g36860.1 68418.m04416 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 1204
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 168 CEILPYDLFTSCQSILDRPINDWVNPF 88
CE++PY + CQ +L P + V PF
Sbjct: 1110 CEMMPYLVRAMCQDVLISPYS--VEPF 1134
>At4g08880.1 68417.m01464 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At1g34730, At1g27790, At1g34740, At1g27780,
At5g36850, At3g42730, At1g52020, At3g24390, At4g05280,
At1g25886, At4g03300
Length = 1463
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 168 CEILPYDLFTSCQSILDRPINDWVNPF 88
CE++PY + CQ +L P + V PF
Sbjct: 939 CEMMPYLVRAMCQDVLISPYS--VEPF 963
>At4g05280.1 68417.m00799 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
At1g25886, At4g03300
Length = 1312
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 168 CEILPYDLFTSCQSILDRPINDWVNPF 88
CE++PY + CQ +L P + V PF
Sbjct: 1023 CEMIPYLVRAMCQDVLISPYS--VEPF 1047
>At4g03300.1 68417.m00451 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790 , At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
At4g05280, At1g25886
Length = 1285
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 168 CEILPYDLFTSCQSILDRPINDWVNPF 88
CE++PY + CQ +L P + V PF
Sbjct: 1190 CEMMPYLVRAMCQDVLISPYS--VEPF 1214
>At3g52330.1 68416.m05751 F-box family protein-related contains weak
hit to TIGRFAM TIGR01640 : F-box protein interaction
domain; similar to F-box protein family, AtFBX8
(GI:20197464) [Arabidopsis thaliana]
Length = 307
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = -1
Query: 216 HHVMSAGTHSNFVRVQCEI--LPYDLFTSCQSIL 121
HHV+ G +++ + QC I LPY + +L
Sbjct: 171 HHVLVLGARTSWKKTQCHIHHLPYSQGITINGVL 204
>At3g24390.1 68416.m03063 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At4g05280,
At1g25886, At4g03300
Length = 1139
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 168 CEILPYDLFTSCQSILDRPINDWVNPF 88
CE++PY + CQ +L P + V PF
Sbjct: 1045 CEMMPYLVRAMCQDVLISPYS--VEPF 1069
>At1g34740.1 68414.m04319 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790, At1g27780,
At5g36850, At3g42730, At1g52020, At3g24390, At4g05280,
At1g25886, At4g03300
Length = 1383
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 168 CEILPYDLFTSCQSILDRPINDWVNPF 88
CE++PY + CQ +L P + V PF
Sbjct: 1050 CEMMPYLVRAMCQDVLISPYS--VEPF 1074
>At1g25886.1 68414.m03180 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
At4g05280, At4g03300
Length = 1201
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 168 CEILPYDLFTSCQSILDRPINDWVNPF 88
CE++PY + CQ +L P + V PF
Sbjct: 1077 CEMMPYLVRAMCQDVLISPYS--VEPF 1101
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,755,786
Number of Sequences: 28952
Number of extensions: 124489
Number of successful extensions: 347
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 301317600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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