Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0932
(303 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 53 8e-09
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 27 0.61
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 26 1.1
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 25 3.2
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 25 3.2
SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces p... 25 3.2
SPAC1705.03c ||SPAC23H4.19|conserved fungal family|Schizosacchar... 24 4.3
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 23 7.5
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 23 7.5
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 23 9.9
SPAC12B10.06c |||DUF339 family protein|Schizosaccharomyces pombe... 23 9.9
SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces... 23 9.9
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 23 9.9
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 53.2 bits (122), Expect = 8e-09
Identities = 25/72 (34%), Positives = 41/72 (56%)
Frame = +1
Query: 40 PHLKQFVKPAIERSIQEWIHPVVDRSIKYALTTCEQIIRKDFALDPDEVRMRTCAHHMMR 219
P +K + I++S+ E I VV RS+ A T + +++KDFA + + R+ A M +
Sbjct: 1129 PAIKNITQLIIQQSVLEIISAVVRRSVGIAAITTKSLLQKDFAAESNPSRLLLAARQMAK 1188
Query: 220 NLTAGMAMITCR 255
L +AM+TCR
Sbjct: 1189 TLAGNLAMVTCR 1200
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 27.1 bits (57), Expect = 0.61
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = -2
Query: 302 DESCLQISADGGDDLLRHVIIAMPAVKLRIM**AQVRIRTSSGSNAKSFRMICS 141
D SC+ +++DGG +L + + I R+ T G N KS+R+I S
Sbjct: 1332 DFSCVMVNSDGGLQMLVPISDRVYRRLNIIQNYLANRVNTIGGLNPKSYRLITS 1385
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 26.2 bits (55), Expect = 1.1
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +1
Query: 19 IILFQNYPHLKQ-FVKPAIERSIQEWIHPVVDRSIKY 126
I+LF + F+K + + EW P++ RS Y
Sbjct: 288 IVLFYTISKKPEPFIKRIADNLVSEWSRPIIKRSANY 324
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 24.6 bits (51), Expect = 3.2
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 103 VVDRSIKYALTTCEQIIRKDFALDPDEVRMRTCAHHMMRNL 225
VV S+K A+ + + DF EVR+ AHH + +L
Sbjct: 228 VVMSSMKEAMHAIQMLHNTDFMGRTLEVRLDRFAHHKIEDL 268
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 24.6 bits (51), Expect = 3.2
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 62 SPRSRDRSKNGFTQSLIGLSSML*QLVNRSY 154
SPR R+RS N + S + SS L + +RSY
Sbjct: 682 SPRGRERSSNRNSYSDLSRSSSLSRGRSRSY 712
>SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 285
Score = 24.6 bits (51), Expect = 3.2
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 79 SIQEWIHPVVDRSIKYALTTCEQIIRKDF 165
SI+ I P ++ +IKY + E++ R+DF
Sbjct: 173 SIEHIIIPRLENTIKYIESELEELEREDF 201
>SPAC1705.03c ||SPAC23H4.19|conserved fungal
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 24.2 bits (50), Expect = 4.3
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +2
Query: 8 STLT*SYSKTTRILNSL*SPRSRDRSKNGFTQSLIGLSSML 130
S T SYS + +S S + NGFT + L S+L
Sbjct: 375 SATTTSYSSDSSASSSSSSSHESSAASNGFTAGALVLGSLL 415
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 23.4 bits (48), Expect = 7.5
Identities = 9/30 (30%), Positives = 14/30 (46%)
Frame = +1
Query: 43 HLKQFVKPAIERSIQEWIHPVVDRSIKYAL 132
H+K + P I+ Q WI ++ K L
Sbjct: 1906 HIKSHLPPIIQPEFQSWIVEFIEEVYKQKL 1935
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 23.4 bits (48), Expect = 7.5
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
Frame = +1
Query: 133 TTCEQIIRKDFALDP--DEVR 189
T CE+ KDFAL P DEV+
Sbjct: 981 TLCERSQEKDFALRPSIDEVK 1001
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 23.0 bits (47), Expect = 9.9
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -3
Query: 211 CDERRYAFELRQGPMRNPSV 152
CD +YA +L P +PSV
Sbjct: 146 CDRNKYAIQLPLPPKIDPSV 165
>SPAC12B10.06c |||DUF339 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 139
Score = 23.0 bits (47), Expect = 9.9
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -1
Query: 189 SNFVRVQCEILPYDLFTSCQSILDRPINDW 100
SNF + Q + P L +LD P DW
Sbjct: 69 SNFAKDQIDKYPVSLLREYDQLLDEP--DW 96
>SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 23.0 bits (47), Expect = 9.9
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -1
Query: 171 QCEILPYDLFTSCQSILDRPINDWVNPFLDRSL 73
+C+ + YDL+ + I D +W P D+S+
Sbjct: 401 KCQPIAYDLWLEVRQICDYVCANWKRP--DKSI 431
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 23.0 bits (47), Expect = 9.9
Identities = 13/60 (21%), Positives = 26/60 (43%)
Frame = -1
Query: 231 GSQVAHHVMSAGTHSNFVRVQCEILPYDLFTSCQSILDRPINDWVNPFLDRSLDRGLYKL 52
G+ V H++ G+ S+ + ++ + LF SC + ++ D R L K+
Sbjct: 590 GNYVVQHILRTGSESDKKYIFDLMIDHLLFLSCHKFASNVVERCISYISDVDRRRILNKI 649
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,270,527
Number of Sequences: 5004
Number of extensions: 23212
Number of successful extensions: 62
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -