Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0932
(303 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29526| Best HMM Match : No HMM Matches (HMM E-Value=.) 126 5e-30
SB_57902| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.3
SB_40817| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.6e-36) 27 2.2
SB_23499| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.9
SB_21451| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.9
SB_37875| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.1
SB_37542| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.1
SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3) 26 5.1
SB_146| Best HMM Match : DUF836 (HMM E-Value=1.5) 26 5.1
SB_25578| Best HMM Match : ShTK (HMM E-Value=2.4e-06) 25 8.9
SB_3515| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.9
>SB_29526| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1120
Score = 126 bits (303), Expect = 5e-30
Identities = 56/82 (68%), Positives = 68/82 (82%)
Frame = +1
Query: 10 NPHIILFQNYPHLKQFVKPAIERSIQEWIHPVVDRSIKYALTTCEQIIRKDFALDPDEVR 189
N I LFQ +PHLKQ V+PAIER++QE +HPVV+RSIK LTT E I++KDFALDP+E R
Sbjct: 76 NQQIQLFQQHPHLKQCVRPAIERAVQELVHPVVERSIKICLTTAEMIVKKDFALDPEESR 135
Query: 190 MRTCAHHMMRNLTAGMAMITCR 255
MR AHHM+R +TAGMA+ITCR
Sbjct: 136 MRAAAHHMVRFMTAGMALITCR 157
>SB_57902| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 430
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/75 (18%), Positives = 31/75 (41%)
Frame = +1
Query: 22 ILFQNYPHLKQFVKPAIERSIQEWIHPVVDRSIKYALTTCEQIIRKDFALDPDEVRMRTC 201
I+ Y +K+ + + +Q+W HP + ++ Q R ++ D D
Sbjct: 355 IISDTYERIKRLIDKSFSHCVQDWGHPPCTKLERFVHGNNCQRCRSEYRNDEDATGNSIA 414
Query: 202 AHHMMRNLTAGMAMI 246
H+ ++L + +I
Sbjct: 415 PHNHRQHLESPDVLI 429
>SB_40817| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.6e-36)
Length = 888
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 183 SSNAYLRSSHDAQLDCRHGNDHMPEQIITTIS 278
S+ AY S D+ + C H + H + IITT++
Sbjct: 780 SATAYNHSYSDSGMFCIHASAHPTQVIITTVT 811
>SB_23499| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 142
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 37 YPHLKQFVKPAIERSIQEWIHPVVDRSIKYALTTCEQ 147
+P + + P+I+ SIQ IHP + SI+ A Q
Sbjct: 14 HPSIHPSIHPSIQPSIQPSIHPSIHPSIQPASQPASQ 50
>SB_21451| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 324
Score = 27.1 bits (57), Expect = 2.9
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1
Query: 73 ERSIQEWIHPVVDRSIKYALTTCEQIIR 156
E+++ + I ++DRS KY+L T E + R
Sbjct: 175 EKALYDHIKLILDRSYKYSLVTIENLNR 202
>SB_37875| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 544
Score = 26.2 bits (55), Expect = 5.1
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = -2
Query: 281 SADGGDDLLRHVIIAMPAVKLRIM**AQVRIRTSSGSNAKSFRMICSQVVKAYLIDL 111
SA D LR V+ AV A +R+ T SG NA ++C V+ ++ ++
Sbjct: 456 SASSLTDSLRSVVRLRRAVSAHSK--AVIRLSTESGDNAGKNIIVCLAVLGVFIAEI 510
>SB_37542| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 657
Score = 26.2 bits (55), Expect = 5.1
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 3 LFQPSHNLI-PKLPAS*TVCKARDREIDPRMDSPS 104
++QPS+++ P +CK D +I P M SPS
Sbjct: 50 IYQPSYDIFTPDEHDIWIMCKHLDHQISPSMTSPS 84
>SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)
Length = 509
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/40 (30%), Positives = 16/40 (40%)
Frame = -1
Query: 243 HCHAGSQVAHHVMSAGTHSNFVRVQCEILPYDLFTSCQSI 124
HCH HH +S HSN +R+ P C +
Sbjct: 267 HCHCPRLSNHHRLSRHLHSNRLRLSIHHHPSSRHHHCHRL 306
>SB_146| Best HMM Match : DUF836 (HMM E-Value=1.5)
Length = 554
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +1
Query: 7 FNPHIILFQNYPHLKQFVKPAIERSIQEWIHPVVDRSIK 123
+NP L P ++Q K A++R++QEW+ +R ++
Sbjct: 221 WNPWDELVLPPPTIRQ-KKEAVQRNVQEWLESTDEREVQ 258
>SB_25578| Best HMM Match : ShTK (HMM E-Value=2.4e-06)
Length = 257
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +3
Query: 18 HNLIPKLPAS*TVCKARDRE 77
H L P P TVCK DRE
Sbjct: 85 HPLFPLYPIDYTVCKNNDRE 104
>SB_3515| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1295
Score = 25.4 bits (53), Expect = 8.9
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 154 RKDFALDPDEVRMRTCA 204
+KDF +D D RM+ CA
Sbjct: 1227 KKDFTVDEDSFRMKFCA 1243
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,872,572
Number of Sequences: 59808
Number of extensions: 189764
Number of successful extensions: 552
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 364677581
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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