Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0932
(303 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeas... 101 1e-22
Z98877-6|CAD56617.1| 432|Caenorhabditis elegans Hypothetical pr... 27 3.4
Z98877-3|CAB54472.2| 537|Caenorhabditis elegans Hypothetical pr... 27 3.4
U55857-3|AAA98028.1| 303|Caenorhabditis elegans Hypothetical pr... 26 4.5
Z81568-15|CAB04595.2| 610|Caenorhabditis elegans Hypothetical p... 26 6.0
Z81568-14|CAB04591.2| 608|Caenorhabditis elegans Hypothetical p... 26 6.0
U40933-9|ABD63229.1| 867|Caenorhabditis elegans Hypothetical pr... 26 6.0
U40933-8|AAA81677.1| 1030|Caenorhabditis elegans Hypothetical pr... 26 6.0
AL132898-4|CAC14407.3| 968|Caenorhabditis elegans Hypothetical ... 26 6.0
AL023835-8|CAA19491.1| 483|Caenorhabditis elegans Hypothetical ... 26 6.0
>U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 1 protein.
Length = 2500
Score = 101 bits (241), Expect = 1e-22
Identities = 44/80 (55%), Positives = 60/80 (75%)
Frame = +1
Query: 16 HIILFQNYPHLKQFVKPAIERSIQEWIHPVVDRSIKYALTTCEQIIRKDFALDPDEVRMR 195
H+ LFQ +PH K V+PA+ +I+E I PV +R++K A+T E ++RKDFALDP+E +R
Sbjct: 1457 HLPLFQLHPHAKHLVRPAMIHAIKELIGPVTERALKIAMTVTESLVRKDFALDPEEQNLR 1516
Query: 196 TCAHHMMRNLTAGMAMITCR 255
+ HMMR +TAGMAMITCR
Sbjct: 1517 AASFHMMRAMTAGMAMITCR 1536
>Z98877-6|CAD56617.1| 432|Caenorhabditis elegans Hypothetical
protein Y69H2.3d protein.
Length = 432
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = -1
Query: 255 PACDHCHAGSQVAHHVMSAGTHSNFVRVQCEILPYDLFTSCQSILDRPIN 106
P C H +A + + V G+ +VQC P D C++ + +PIN
Sbjct: 321 PMCIHVNACASTSCLV---GSQCVLHQVQCFTQPCDPIAQCEAPIKKPIN 367
>Z98877-3|CAB54472.2| 537|Caenorhabditis elegans Hypothetical
protein Y69H2.3a protein.
Length = 537
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = -1
Query: 255 PACDHCHAGSQVAHHVMSAGTHSNFVRVQCEILPYDLFTSCQSILDRPIN 106
P C H +A + + V G+ +VQC P D C++ + +PIN
Sbjct: 426 PMCIHVNACASTSCLV---GSQCVLHQVQCFTQPCDPIAQCEAPIKKPIN 472
>U55857-3|AAA98028.1| 303|Caenorhabditis elegans Hypothetical
protein K08D10.8 protein.
Length = 303
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = -1
Query: 222 VAHHVMSAGTHSNFVR-VQCEILPYDLFTSCQS 127
VA++++SA H+N V VQC I P ++FT ++
Sbjct: 81 VANNILSAIAHTNSVMVVQC-IKPLEIFTGFET 112
>Z81568-15|CAB04595.2| 610|Caenorhabditis elegans Hypothetical
protein K08E3.3b protein.
Length = 610
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 169 LDPDEVRMRTCAHHMMRNLTAGMAMITCRSRSSPPSAL 282
LD R +T A H+ + + +A TC+ RSS +A+
Sbjct: 83 LDQIATRHQTSAEHIRGGVVSYVASKTCQMRSSRKNAI 120
>Z81568-14|CAB04591.2| 608|Caenorhabditis elegans Hypothetical
protein K08E3.3a protein.
Length = 608
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 169 LDPDEVRMRTCAHHMMRNLTAGMAMITCRSRSSPPSAL 282
LD R +T A H+ + + +A TC+ RSS +A+
Sbjct: 83 LDQIATRHQTSAEHIRGGVVSYVASKTCQMRSSRKNAI 120
>U40933-9|ABD63229.1| 867|Caenorhabditis elegans Hypothetical
protein F20D12.1b protein.
Length = 867
Score = 25.8 bits (54), Expect = 6.0
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Frame = -1
Query: 189 SNFVRVQCEILPYDLFTSCQSILDRP------INDWVNPFLDRSLD 70
SNF++ L DL SC+ L++P +N+W +P LD
Sbjct: 116 SNFLKDSISFLSGDLEISCEPDLEKPSFVQTELNEWSDPRFYAYLD 161
>U40933-8|AAA81677.1| 1030|Caenorhabditis elegans Hypothetical
protein F20D12.1a protein.
Length = 1030
Score = 25.8 bits (54), Expect = 6.0
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Frame = -1
Query: 189 SNFVRVQCEILPYDLFTSCQSILDRP------INDWVNPFLDRSLD 70
SNF++ L DL SC+ L++P +N+W +P LD
Sbjct: 279 SNFLKDSISFLSGDLEISCEPDLEKPSFVQTELNEWSDPRFYAYLD 324
>AL132898-4|CAC14407.3| 968|Caenorhabditis elegans Hypothetical
protein Y59A8B.6 protein.
Length = 968
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +1
Query: 70 IERSIQEWIHPVVDRSIKYALTTCEQIIRKDFALDPDEVRMRT 198
+E + +W+ VD + TC+ IIR L ++ RT
Sbjct: 525 VEINRDQWLKDAVDAEMAKCPITCQAIIRNVIGLGVEDEDKRT 567
>AL023835-8|CAA19491.1| 483|Caenorhabditis elegans Hypothetical
protein Y37A1B.8 protein.
Length = 483
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 40 PHLKQFVKPAIERSIQEWIHPVV 108
P +K+F PA++R + HPV+
Sbjct: 274 PEMKRFGLPALKRIESSYFHPVI 296
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,158,162
Number of Sequences: 27780
Number of extensions: 135956
Number of successful extensions: 381
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 323867940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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