Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0931
         (811 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    29   0.044
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    28   0.076
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    28   0.076
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   2.2  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   2.2  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   2.2  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   2.2  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    23   2.9  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   3.8  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   3.8  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    22   6.6  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    21   8.8  

>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 29.1 bits (62), Expect = 0.044
 Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
 Frame = -2

Query: 339 IRMKFPVAMESLQDYY---LSNYSYFDLYL*ALGFWIII-FSVVNSIGNVTIFAFLLVQF 172
           IR  FP   +++ ++    L+NY  F     A GF+ I   +++  IGNVT F  +++QF
Sbjct: 288 IRQVFPNEKKNISEFINVVLNNYPDFS----AAGFFSINKTTLLQIIGNVTTFFIIIIQF 343

Query: 171 VSRY 160
            +++
Sbjct: 344 NNKH 347


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 28.3 bits (60), Expect = 0.076
 Identities = 17/68 (25%), Positives = 38/68 (55%)
 Frame = -2

Query: 804 SHIVLETHKNDHRICQ**KYSSLTLIHTTMCLKRSLRNAQFQVVDLRAFEFSDGVIMMSP 625
           S I+ +TH+N  R C+  K  ++ +    +  +R  RN+  +   + ++ +++  +MMSP
Sbjct: 81  SCIIDKTHRNQCRACRLKKCQNVGMNKDAVQHERGPRNSTLRRQQMSSY-YNESRVMMSP 139

Query: 624 AFDLLLVT 601
             ++L +T
Sbjct: 140 PGNVLNLT 147


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 28.3 bits (60), Expect = 0.076
 Identities = 17/68 (25%), Positives = 38/68 (55%)
 Frame = -2

Query: 804 SHIVLETHKNDHRICQ**KYSSLTLIHTTMCLKRSLRNAQFQVVDLRAFEFSDGVIMMSP 625
           S I+ +TH+N  R C+  K  ++ +    +  +R  RN+  +   + ++ +++  +MMSP
Sbjct: 81  SCIIDKTHRNQCRACRLKKCQNVGMNKDAVQHERGPRNSTLRRQQMSSY-YNESRVMMSP 139

Query: 624 AFDLLLVT 601
             ++L +T
Sbjct: 140 PGNVLNLT 147


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 224 WLIPLATSPFSLFFWCNS*VGTNSYLPF 141
           W+IP+A    SL +W N  +  +S +PF
Sbjct: 254 WIIPIAIFLVSLGWWENY-ISRHSPIPF 280


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 224 WLIPLATSPFSLFFWCNS*VGTNSYLPF 141
           W+IP+A    SL +W N  +  +S +PF
Sbjct: 254 WIIPIAIFLVSLGWWENY-ISRHSPIPF 280


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 224 WLIPLATSPFSLFFWCNS*VGTNSYLPF 141
           W+IP+A    SL +W N  +  +S +PF
Sbjct: 254 WIIPIAIFLVSLGWWENY-ISRHSPIPF 280


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 224 WLIPLATSPFSLFFWCNS*VGTNSYLPF 141
           W+IP+A    SL +W N  +  +S +PF
Sbjct: 254 WIIPIAIFLVSLGWWENY-ISRHSPIPF 280


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = -3

Query: 281 TPILICISRLSVF-GSLFSAWLIPLATSPFSLFFWCNS*VGTNSYLPFTFFSMGF 120
           T I + +S L  F    F+ W I  + S F   F C++      YL F F ++ F
Sbjct: 52  TYIKLVVSVLMDFIAYFFNFWTILFSRSDFFQQFECDNEPKLRHYLIFIFVNVFF 106



 Score = 23.0 bits (47), Expect = 2.9
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -2

Query: 228 SVVNSIGNVTIFAFLLVQFVSRYQFIFTIHFLFYGIFNNSRF 103
           + V+   ++   +FLL+   S   F+  I  LF+  F  S+F
Sbjct: 191 NTVDDFNDIFGISFLLIISYSTLHFVNYIDDLFFFRFEKSKF 232


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = -3

Query: 308 LCKIIIFRTTPILICISRLSVFGSLFSAWLIPLATSPFSLFFWCNS*VGTNSYLPF 141
           LC+++I  TT ILI +  L          +I ++TS +    W NS +    ++ F
Sbjct: 423 LCELLIEGTTSILINVPSL----------IIHVSTSAYVATVWINSVINRWKFIEF 468


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 198 IFAFLLVQFVSRYQFIFTIHFLFY 127
           +F   +  F S +  IFTIH LFY
Sbjct: 207 LFLPCIYYFYSAF-IIFTIHLLFY 229


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 595 RCFGLRCLSHLY 560
           R  GL+CL HL+
Sbjct: 372 RSIGLKCLEHLF 383


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/48 (18%), Positives = 23/48 (47%)
 Frame = -2

Query: 252 LGFWIIIFSVVNSIGNVTIFAFLLVQFVSRYQFIFTIHFLFYGIFNNS 109
           +  + I ++   S  N  +    LV     + ++FT+++++Y +   S
Sbjct: 120 INLYTINYNFKESERNDYVSLLQLVFVFCYFIYLFTVYYIYYSVHEAS 167


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,619
Number of Sequences: 336
Number of extensions: 4785
Number of successful extensions: 22
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22102797
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)