Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0931
(811 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0878 + 6735266-6735340,6735946-6736041,6738610-6738720,673... 33 0.27
06_03_0914 + 25920277-25920405,25920783-25920810,25920890-259209... 32 0.47
06_01_0179 - 1388602-1389572,1390060-1390129,1390346-1390439,139... 31 1.1
04_04_1690 - 35382241-35382553,35382614-35382933,35383601-353851... 31 1.1
07_03_1791 - 29552218-29552427,29552858-29553358,29560369-295604... 30 1.9
03_05_0559 - 25610474-25610951,25611149-25611890,25612355-256127... 30 2.5
01_05_0117 - 18300157-18301106,18301149-18301543,18302592-183026... 30 2.5
05_04_0132 + 18303925-18307164 29 3.3
11_06_0284 + 21909758-21913645 29 4.4
03_05_1082 - 30239385-30239561,30239937-30240009,30240382-302404... 29 4.4
03_02_0064 + 5353417-5353419,5353440-5353536,5353631-5353699,535... 29 4.4
02_03_0226 - 16591383-16592030,16592132-16592211,16592246-165929... 29 5.8
06_01_1137 + 9412230-9412378,9412549-9412634,9413417-9413496,941... 28 7.6
05_01_0146 - 953957-956278,956468-956786,957185-957213 28 7.6
02_04_0268 + 21435231-21435240,21435330-21435558,21435778-214358... 28 7.6
>06_01_0878 +
6735266-6735340,6735946-6736041,6738610-6738720,
6738816-6739309,6739422-6739587,6739666-6739789,
6739874-6739986,6740085-6740693,6743095-6743385,
6743845-6743913,6744099-6744188,6744281-6744696,
6744882-6744969
Length = 913
Score = 33.1 bits (72), Expect = 0.27
Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 2/95 (2%)
Frame = +3
Query: 267 NQNRSSSKDNNLAKTPSQQETSFESAPASPDSRKDNNSLSSEDLFVPLNDDENPRLNGTN 446
++ +SS +D + + S+ N + +DL +P D E+ +
Sbjct: 435 DEEKSSGEDGGEGLDSDDSSSEDSESSEKEKSKTSQNGRTVDDLGLPSEDSEDGDFDPAG 494
Query: 447 -DSDTSQ-PLINGDQNTDSDFLSRRVNTCQYIRQT 545
DSD Q N DQ+ +SDF S + C I ++
Sbjct: 495 PDSDKEQNDESNSDQSDESDFTSDSDDFCAEIAKS 529
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +3
Query: 240 SKNREPRDTNQNRSSSKDNNLAKTPSQQETSFESAPASPDSRKDNNSLSSED 395
S +E T+QN + D L PS+ + PA PDS K+ N S+ D
Sbjct: 460 SSEKEKSKTSQNGRTVDDLGL---PSEDSEDGDFDPAGPDSDKEQNDESNSD 508
>06_03_0914 +
25920277-25920405,25920783-25920810,25920890-25920990,
25921356-25921479,25921793-25921903,25922222-25922397,
25922766-25922848,25922935-25923007,25923630-25923695,
25923776-25923818,25924600-25924739,25924878-25925090,
25925397-25925481,25925558-25925852,25926855-25927110,
25927237-25927450,25927701-25927912,25928054-25928203
Length = 832
Score = 32.3 bits (70), Expect = 0.47
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = +2
Query: 503 LIPSREYVPVYSPDMGRVRIKMTETPKP--KTPVLVTRSRSNAGDIIITPSENSNARKST 676
L+P ++ + + D+ +VR K E PK K P + S +G+I+ P+ NS S+
Sbjct: 625 LLPKSQWQSLANLDIIKVRNKPIEPPKKPEKAPFFLPTVPSLSGEILFEPAANSKETDSS 684
Query: 677 T 679
T
Sbjct: 685 T 685
>06_01_0179 -
1388602-1389572,1390060-1390129,1390346-1390439,
1390587-1390687,1391152-1391220,1391328-1391482,
1392193-1392241,1392611-1392739,1392825-1393580,
1394711-1394902
Length = 861
Score = 31.1 bits (67), Expect = 1.1
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Frame = +3
Query: 264 TNQNRSSSKDNNLAKTPSQQETSFESAPASPDSRKDNNSLSSEDLFVPLNDDENPR---L 434
T+ N S S L + S SF PASP S NN S + P+ P+
Sbjct: 117 TDANSSLSGGAQLQPSTSMNADSFMRLPASPMSFSSNNISGSSVIDGPIVQQSPPQEQMQ 176
Query: 435 NGTNDSDTSQPLIN 476
+ S TSQP+I+
Sbjct: 177 KRRSSSVTSQPVID 190
>04_04_1690 - 35382241-35382553,35382614-35382933,35383601-35385164,
35385254-35385372,35385701-35385811,35386068-35386595,
35386702-35386881,35386957-35387556,35387646-35388066,
35388183-35388280,35388372-35389260,35389366-35389544,
35389647-35389763,35389862-35389952,35390578-35390753
Length = 1901
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +3
Query: 357 DSRKDNNSLSSEDLFVPLND---DENPRLNGTNDSDTSQPLINGDQNTDSD 500
D D+++ SED +PL D ++ N ++D + + +GD+N D D
Sbjct: 1806 DDEDDDDNDDSEDGIIPLTDIGDSDSDISNSSDDGGDDEDIDSGDENDDDD 1856
>07_03_1791 -
29552218-29552427,29552858-29553358,29560369-29560449,
29563783-29564015,29564976-29565042
Length = 363
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/65 (23%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Frame = +2
Query: 455 YVPAAYKRRSKYGFRFLIPSREYVPVYSPDMGRVRIKMTETPKPKTPVL---VTRSRSNA 625
+ P AYK++ + + +P+ P+++ D +R+ + TP P+ V+ + S A
Sbjct: 7 WYPLAYKKKVNWVPKGALPADLRWPLHTGDWSAIRVAVAPTPSPRHGVVGISDSDSEGRA 66
Query: 626 GDIII 640
G +++
Sbjct: 67 GGLVV 71
>03_05_0559 -
25610474-25610951,25611149-25611890,25612355-25612744,
25613041-25613099,25613186-25613326,25613449-25613545,
25614999-25615185
Length = 697
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/48 (29%), Positives = 28/48 (58%)
Frame = +3
Query: 240 SKNREPRDTNQNRSSSKDNNLAKTPSQQETSFESAPASPDSRKDNNSL 383
+K +EP NQ+RSS ++ L+ + + S++++ +S D R S+
Sbjct: 560 AKPKEPEPANQSRSSERNQRLSSSHG-TDPSYKTSRSSSDRRDHRRSI 606
>01_05_0117 - 18300157-18301106,18301149-18301543,18302592-18302681,
18303723-18303836,18303903-18304046,18316147-18316312,
18316396-18317130,18317219-18317422,18317496-18318177,
18318272-18318528,18318604-18319298,18319345-18319382,
18319847-18319928,18320018-18320112,18320443-18320526,
18320601-18320891,18321521-18321853,18321948-18322150,
18322243-18322399,18322482-18322585,18322675-18322835,
18323511-18323824,18324317-18324589,18324666-18324967,
18325459-18325549,18326140-18326190,18326700-18326768,
18326926-18327017,18327082-18327148,18328582-18328746,
18329027-18329103,18329572-18329766,18330208-18330275,
18331081-18331172,18331399-18331522,18331608-18331705,
18332384-18332997,18333620-18333626
Length = 2892
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 79 DMNKSLLGKPAVIENPIEKKVNGKYELVPTHELHQKKSENGD 204
++N +L KP ++ EK++NG ++ HE H + GD
Sbjct: 1344 EVNSNLSAKP-IVNYKKEKRLNGMGQVCTVHEAHCAQDRRGD 1384
>05_04_0132 + 18303925-18307164
Length = 1079
Score = 29.5 bits (63), Expect = 3.3
Identities = 20/83 (24%), Positives = 42/83 (50%)
Frame = +3
Query: 294 NNLAKTPSQQETSFESAPASPDSRKDNNSLSSEDLFVPLNDDENPRLNGTNDSDTSQPLI 473
+N+ ++ETS E + ++ S+S + D+EN + +G ++ + S+ +I
Sbjct: 461 DNIPDECCKEETSMEQDEGGDGTNMESESISEVAEHPNVEDEENTQDDGGSEMEISEEII 520
Query: 474 NGDQNTDSDFLSRRVNTCQYIRQ 542
+G + DF S V T +Y+ +
Sbjct: 521 SG-FGCEEDF-SEEV-TSKYVSE 540
>11_06_0284 + 21909758-21913645
Length = 1295
Score = 29.1 bits (62), Expect = 4.4
Identities = 19/105 (18%), Positives = 44/105 (41%)
Frame = +3
Query: 243 KNREPRDTNQNRSSSKDNNLAKTPSQQETSFESAPASPDSRKDNNSLSSEDLFVPLNDDE 422
K ++ + + R + + + ++E E + RK+ ED +DD+
Sbjct: 462 KEKKEKGGREERKEEEHHEKQEKEKEEERKEEGQNEEKEGRKEVGEEEKEDDDDDYDDDD 521
Query: 423 NPRLNGTNDSDTSQPLINGDQNTDSDFLSRRVNTCQYIRQTWEGF 557
+ + +D++ + + D + D D ++T QY++ E F
Sbjct: 522 DYDDDDYDDNEEEKKYDDDDDDDDDDDDPIHLHTAQYMQILQEVF 566
>03_05_1082 -
30239385-30239561,30239937-30240009,30240382-30240432,
30240521-30240978,30241099-30241435,30241836-30241935,
30243880-30244003
Length = 439
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Frame = +3
Query: 252 EPRD-TNQNRSSSKDNNLAKTPSQQETSFE---SAPASPDSRKDNNSLSSEDLFVPLN 413
E RD Q S+++ + KT ++++ + + + +S + RKD++++ EDL PLN
Sbjct: 162 EGRDHKTQKISAAQSAKMTKTGNKKKNNTDVDVTIQSSSEDRKDDHTIDKEDLKKPLN 219
>03_02_0064 +
5353417-5353419,5353440-5353536,5353631-5353699,
5353783-5353875,5353991-5354114,5354733-5354802,
5354876-5354917,5355072-5355200,5355288-5355395,
5357747-5357881,5358064-5358099
Length = 301
Score = 29.1 bits (62), Expect = 4.4
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Frame = +3
Query: 369 DNNSLSSEDLFVPLNDDENPRLNGTNDSD-TSQPLINGDQNTDSDFLSRRVNT 524
D+N+++SED + L D+E+ + N +D++ T++PL+ FL+RR T
Sbjct: 218 DDNNVNSEDDNMSL-DNESDQDNDFSDNEPTTEPLLQPPVRQVQGFLARRRET 269
>02_03_0226 -
16591383-16592030,16592132-16592211,16592246-16592971,
16593060-16593192,16596839-16597518,16597604-16597666,
16597740-16597916,16598414-16598542,16598638-16598796,
16599057-16599224,16599418-16599519,16599812-16599857
Length = 1036
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 357 DSRKDNNSLSSEDLFVPLNDDENPRLNGTNDSDTSQP 467
DS D++S +FV L DDE+ + ++D DT P
Sbjct: 264 DSFMDDDSDDEYYMFVGLGDDEDDDMVQSDDDDTQSP 300
>06_01_1137 +
9412230-9412378,9412549-9412634,9413417-9413496,
9413826-9413881,9414038-9414086,9414692-9414841,
9414993-9415088,9415442-9415555,9415655-9415785,
9416171-9416408,9416603-9416656,9417100-9417117,
9417906-9418722,9418797-9418846
Length = 695
Score = 28.3 bits (60), Expect = 7.6
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = +1
Query: 58 KASKEMVDMNKSLLGKPAVIENPIEKKVNGKYELVPTHELHQKKSENGDVANGIN 222
K+S++ V+ SLL K I + IE K +LV + KSEN DV + ++
Sbjct: 321 KSSEQQVETADSLLDKKDTITSDIESKK----KLVEEEKNKLAKSENADVGDDLD 371
>05_01_0146 - 953957-956278,956468-956786,957185-957213
Length = 889
Score = 28.3 bits (60), Expect = 7.6
Identities = 17/75 (22%), Positives = 28/75 (37%)
Frame = +3
Query: 240 SKNREPRDTNQNRSSSKDNNLAKTPSQQETSFESAPASPDSRKDNNSLSSEDLFVPLNDD 419
S N + + + + KT + S + P + ++SS+D P D
Sbjct: 783 SSNGDMNHEEEKGETKVEQEEVKTECTTQESNKIIEKQPHPDRKQETVSSKDELEPKEDT 842
Query: 420 ENPRLNGTNDSDTSQ 464
NGT DTS+
Sbjct: 843 NTEHPNGTVSEDTSK 857
>02_04_0268 +
21435231-21435240,21435330-21435558,21435778-21435898,
21435992-21436264
Length = 210
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/45 (35%), Positives = 19/45 (42%)
Frame = +3
Query: 258 RDTNQNRSSSKDNNLAKTPSQQETSFESAPASPDSRKDNNSLSSE 392
+ T + SSK N PS+Q S S PA P KD E
Sbjct: 103 KQTKVSNGSSKSNKSNPKPSKQSNS-NSKPAKPPQPKDEEDSGPE 146
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,985,643
Number of Sequences: 37544
Number of extensions: 453846
Number of successful extensions: 1415
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1412
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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