Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0931
         (811 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    23   2.5  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   5.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   5.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   7.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   7.7  
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    22   7.7  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    22   7.7  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 196 NGDVANGINHAENNDPK 246
           N + +NGI+H E+  PK
Sbjct: 45  NFETSNGISHQESGQPK 61


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 18/85 (21%), Positives = 34/85 (40%)
 Frame = +3

Query: 267 NQNRSSSKDNNLAKTPSQQETSFESAPASPDSRKDNNSLSSEDLFVPLNDDENPRLNGTN 446
           NQN  +   NN  +    Q  + ++     D+R+++N  +         +D     N  N
Sbjct: 434 NQNADNQNANN--QNADNQNANKQNGNRQNDNRQNDNKQNGNR-----QNDNKQNGNRQN 486

Query: 447 DSDTSQPLINGDQNTDSDFLSRRVN 521
           D+  +    NG++  D+     R N
Sbjct: 487 DNKQNGNRQNGNKQNDNKQNGNRQN 511


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +3

Query: 411 NDDENPRLNGTNDSDTSQPLINGDQNTD 494
           N++ N   NG ND+       N + N D
Sbjct: 244 NNNNNNNNNGANDNGNGNGASNNNNNGD 271


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -3

Query: 95  KDLFMSTISFEAFSTSLFC 39
           K+LF++ + F ++   LFC
Sbjct: 415 KELFIAIVCFVSYLIGLFC 433


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -3

Query: 95  KDLFMSTISFEAFSTSLFC 39
           K+LF++ + F ++   LFC
Sbjct: 468 KELFIAIVCFVSYLIGLFC 486


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 279 SSSKDNNLAKTPSQQETSFESAPASPDSR 365
           SSS DN   KT        E+ P+ PD +
Sbjct: 50  SSSGDNTYTKTFKMNVPFEETLPSLPDRK 78


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 279 SSSKDNNLAKTPSQQETSFESAPASPDSR 365
           SSS DN   KT        E+ P+ PD +
Sbjct: 52  SSSGDNTYTKTFKMNVPFEETLPSLPDRK 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,926
Number of Sequences: 438
Number of extensions: 5154
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)